Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30774.Seq
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          109   9e-25
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   108   3e-24
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           69   3e-12

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  109 bits (263), Expect = 9e-25
 Identities = 50/66 (75%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 260 LTGRLNKCGVISPRFDVPINXIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 436
           L GRLNKCGVISPRFDV +  IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK
Sbjct: 65  LNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGK 124

Query: 437 ILGLLF 454
           +LG  +
Sbjct: 125 VLGFFY 130



 Score =  109 bits (261), Expect = 2e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  108 bits (259), Expect = 3e-24
 Identities = 49/62 (79%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score =  103 bits (248), Expect = 6e-23
 Identities = 49/62 (79%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = +2

Query: 260 LTGRLNKCGVISPRFDVPINXIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 436
           L GRLNKCGVISPRFDV +  IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK
Sbjct: 65  LNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGK 124

Query: 437 IL 442
            L
Sbjct: 125 EL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 251
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 27/63 (42%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +2

Query: 260 LTGRLNKCGVISPRFDVPINXIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGK 436
           L GR+  C  ++ R D+    IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG+
Sbjct: 64  LHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQ 123

Query: 437 ILG 445
           +LG
Sbjct: 124 VLG 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,798
Number of Sequences: 37544
Number of extensions: 202905
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)