Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30774.Seq
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   2e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   7e-06
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   6.1  
SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)             27   8.0  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 200
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 21/28 (75%), Positives = 24/28 (85%), Gaps = 1/28 (3%)
 Frame = +2

Query: 281 CGVISPRFDVPINXIERW-TNLLPSRQF 361
           CGVISPRFDV +  IE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 102 KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 227
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 300 RGEMTPHLFSLPVRFXQSCQLCDHQRFQTLRCNR 199
           RG M  HL S  +     C LCD     +  CNR
Sbjct: 362 RGNMLQHLRSHTLEKPYKCALCDKAFSHSSHCNR 395


>SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)
          Length = 464

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 242 WQDCXNLTGRLNKCGVISPR 301
           W+DC N   R+ +C   +PR
Sbjct: 161 WEDCSNYVDRIRECNCEAPR 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,125
Number of Sequences: 59808
Number of extensions: 237007
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)