Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30774.Seq
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   118   2e-27
U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    28   4.0  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   7.0  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   7.0  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   9.3  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   9.3  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  118 bits (284), Expect = 2e-27
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62



 Score =  110 bits (265), Expect = 4e-25
 Identities = 51/67 (76%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
 Frame = +2

Query: 257 NLTGRLNKCGVISPRFDVPINXIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGG 433
           NLTGRLNK  VISPR ++ +N +E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGG
Sbjct: 64  NLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGG 123

Query: 434 KILGLLF 454
           KILG  F
Sbjct: 124 KILGFFF 130


>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 448 KP*NFSSKVFSSGFFMVHDATTCC 377
           KP N   KV++ G+ M  D  +CC
Sbjct: 145 KPRNVREKVYADGYIMSFDKKSCC 168


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 81  NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 248
           NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADR 883


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 352 TTVWL-PSPYNKWW 390
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 78  YAPWLRFSSRFVANRIDRTVQKKKK 4
           +A WLR+  R   N +++   KKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKKK 347


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 78  YAPWLRFSSRFVANRIDRTVQKKKK 4
           +A WLR+  R   N +++   KKKK
Sbjct: 323 FATWLRYERRINKNDLNKPTNKKKK 347


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 427 KVFSSGFFMVHDATTCCK 374
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 427 KVFSSGFFMVHDATTCCK 374
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,611,806
Number of Sequences: 27780
Number of extensions: 170434
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)