Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30772.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    89   5e-19
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    35   0.007
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.79 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   3.2  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 41/89 (46%), Positives = 55/89 (61%)
 Frame = +3

Query: 255 HMKCXVFIRPTSENIALLSRELRDPKYGVYFIYFXNXVSKADIKTLAECDEXEAVRXVQE 434
           H+KC  F+RPT   + LL  ELRDPKY  Y +YF N + K+ ++ LAE D+ EAV+ +QE
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122

Query: 435 VFADYLAVDRHLFSFXXVGXLQGSGWNXQ 521
            F DYL V+  L SF     ++ S  N Q
Sbjct: 123 FFLDYLVVNNDLASFNIPHIIEDSPDNWQ 151



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/51 (29%), Positives = 35/51 (68%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXEXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
           M+++ A + Y  ++ +     +K++L++++TT IVS   +QS +L++++YL
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYL 50


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 273 FIRPTSENIALLSRELRDPKYGVYFIYFXNXVSKADIKTLAE-CDEXEAVRXVQEVFADY 449
           F++PT ENI L+  +L    Y   ++ F + +S+A ++  AE   +      + +V+  Y
Sbjct: 94  FVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYDQY 153

Query: 450 L 452
           L
Sbjct: 154 L 154


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 280 RIKTXHFMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++  H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMKCXVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,508
Number of Sequences: 5004
Number of extensions: 34399
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)