Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30772.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    69   2e-12
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    32   0.35 
09_02_0249 + 6240237-6240287,6241489-6241764                           28   5.6  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 29/74 (39%), Positives = 47/74 (63%)
 Frame = +3

Query: 255 HMKCXVFIRPTSENIALLSRELRDPKYGVYFIYFXNXVSKADIKTLAECDEXEAVRXVQE 434
           H+K   F+RP+S+N+  L R L  P++  Y ++F N +    I+ LA+ DE E V+ VQE
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125

Query: 435 VFADYLAVDRHLFS 476
            +AD+ A+D + F+
Sbjct: 126 FYADFCAIDPYHFT 139



 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 26/57 (45%), Positives = 42/57 (73%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXEXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M +I  ++ YI +M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 258 MKCXVFIRPTSENIALLSREL--RDPKYGVYFIYFXNXVSKADIKTLAECDEXEA-VRXV 428
           M    FI+PT ENI +   ++  + P Y   +++F + V +  +  + +     A +  +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531

Query: 429 QEVFADYLAVDRHLFS 476
            E+  +Y A+D   F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 328 GSLSSRDNRAMFSDVGRIKTXHFMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,959
Number of Sequences: 37544
Number of extensions: 203972
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)