Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30772.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                     97   1e-20
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)                27   7.6  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXEXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           MNVI AVK Y+TKM E SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57



 Score = 44.4 bits (100), Expect(2) = 9e-06
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 375 ADIKTLAECDEXEAVRXVQEVFADYLAVDRHLFS 476
           A I+ LAE D+ E VR VQE +ADY A+  H+FS
Sbjct: 77  ASIRALAEADDQEVVREVQEYYADYFAISPHVFS 110



 Score = 22.2 bits (45), Expect(2) = 9e-06
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 EHMKCXVFIRPTSENIALLS 311
           +H+K   F+RPT  +I  L+
Sbjct: 64  KHLKAICFLRPTPASIRALA 83


>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/77 (19%), Positives = 35/77 (45%)
 Frame = +1

Query: 25  ILCEINKDNLIKMNVIQAVKMYITKMXEXSGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
           ++CE+ KD+  K  +   V + + K  E    G ++      TT   + +  ++E+++  
Sbjct: 15  LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74

Query: 205 VYLFERIDSHAKWDNMN 255
               E   +++ W+  N
Sbjct: 75  KKSLEAQFANSNWNEFN 91


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 164 TMLVVSLSINITFIPGPLSSXILVMYIL--TACITFILIKLSLFIS 33
           T  + SLS ++TF+ GPL++ +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
          Length = 341

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 334 YLGSLSSRDNRAM---FSDVGRIKTXHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
           YL SL  R + ++   + + GR+ T       +P + D ++  IS++P V  P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,668
Number of Sequences: 59808
Number of extensions: 251717
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)