Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30772.Seq
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    28   0.23 
AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    26   0.71 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   6.6  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 0.23
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 VQSIGNLTEGSLLIREDRQSC 236
           ++ +G  T G ++IRED QSC
Sbjct: 849 MKDVGEKTTGPIVIREDNQSC 869


>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 0.71
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 261 KCXVFIRPTSENIALLSRELRDPKYGVYFIY 353
           KC  F RP S   ALL+ E +   Y + F +
Sbjct: 158 KCVPFCRPFSGQTALLTPESQSANYALTFAF 188


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 146 LSINITFIPGPLSSXILVMYILTACITFILIKL 48
           L + + +IP  LSS I  +  L  CI+   ++L
Sbjct: 183 LYVMVVYIPPQLSSEISTLRSLHDCISSFTLRL 215


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,498
Number of Sequences: 2352
Number of extensions: 8511
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)