Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30772.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 176 YTILTMLVVSLSINIT 129
           Y + TM++V+LSI IT
Sbjct: 315 YLLFTMILVTLSIWIT 330


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 449 PGXGQTPVLFQXXXXPPRFRVEPXASP 529
           PG  +   + Q     PR R EP A P
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAEP 124



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 449 PGXGQTPVLFQXXXXPPRFRVEPXASP 529
           PG  +   + Q     PR R EP A P
Sbjct: 124 PGNNRPVYIPQPRPPHPRLRREPEAEP 150


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 143 SINITFIPGPLSSXILVMYILTACITFIL 57
           SI +   PG L   +L M+IL   ++ ++
Sbjct: 92  SITLISFPGELLMRLLKMFILPLIVSSLI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,895
Number of Sequences: 438
Number of extensions: 2443
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)