Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30768.Seq
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22VA0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q9AW83 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_Q22VA0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 753

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 143 FNYQKKMESKYFMQTLNLTVKIY-RGVKGYHSLNFEKNTQQK--TFNCLNGVNL 295
           F YQ  MES++F Q +     I+ + +  Y  +NF    QQ     NC+  +N+
Sbjct: 79  FQYQNNMESQFFAQPIQNQANIHCQQIPNYQQMNFVNMQQQNYGIINCIYSLNI 132


>UniRef50_Q9AW83 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 938

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 140 FFNYQKKMESKYFM--QTLNLTVKIYRGVKGYHSLNF-EKNTQQKTFNCLNGVNLIE 301
           FF  + +++ K+ +  QT++L     R +  Y+  N+ E    QKTFNC+N +  +E
Sbjct: 808 FFLIKNQIKFKFNIANQTISLNNLYSRYLSKYYFYNYWEFTLNQKTFNCINNIKSVE 864


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,241,968
Number of Sequences: 1657284
Number of extensions: 12076508
Number of successful extensions: 21915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21897
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)