Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30768.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    29   3.2  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    28   5.6  
AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 101 FEWVSKRDAPAALFFNYQKKMESKYFMQTLNLTVKI--YRGVKGYHSLN---FEKNTQQK 265
           F W    +     +FN++    +   M  ++L++ I  Y GVKGY S+N    + N+ QK
Sbjct: 183 FFWPKYNNFTTDQYFNWRTAGGAMIVMGLISLSIAIMVYFGVKGYRSMNKLIAQSNSSQK 242


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 146 NYQKKMESKYFMQTLNLTVKIY--RGVKGYHSLNFEKNTQQ 262
           N+ K  +    M +  L  KIY  +   GYHSLNF+++  Q
Sbjct: 170 NFNKLRQYICIMNSQALKCKIYEHKEENGYHSLNFDESDHQ 210


>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 477 GISIGCYCSVDRRSACCGS*LVYTQTY-LENVLS 379
           GISI CYC+    +AC  S ++    Y L+N ++
Sbjct: 87  GISINCYCAKSFFAACLSSTIIAESIYQLKNTIN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,930
Number of Sequences: 27780
Number of extensions: 303615
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)