Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30768.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD...    30   1.7  
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD...    30   1.7  
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD...    30   1.7  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    29   3.0  

>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 287

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 292 LN*SSIKNIELLILRR*HSYKIFDGCLNLA*DIFKISLSIYKLRTTTCGPSVYRA 456
           +N SSI  +   +LR   +Y    G ++    +  I L++YK+R  +  P ++R+
Sbjct: 162 INVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRS 216


>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 276

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 292 LN*SSIKNIELLILRR*HSYKIFDGCLNLA*DIFKISLSIYKLRTTTCGPSVYRA 456
           +N SSI  +   +LR   +Y    G ++    +  I L++YK+R  +  P ++R+
Sbjct: 153 INVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRS 207


>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 277

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 292 LN*SSIKNIELLILRR*HSYKIFDGCLNLA*DIFKISLSIYKLRTTTCGPSVYRA 456
           +N SSI  +   +LR   +Y    G ++    +  I L++YK+R  +  P ++R+
Sbjct: 154 INVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRS 208


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 FQLFERCKLN*SSIKNIELLILRR*HSYKIFDGCLNLA*DIFKISL 405
           F  +E+CKL  SS  + +LLI     S ++ DG L     I K+SL
Sbjct: 145 FSCYEKCKL--SSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSL 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,219
Number of Sequences: 28952
Number of extensions: 263134
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)