Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30765.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 110 1e-25
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 110 1e-25
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 32 0.055
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 28 0.68
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.1
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 2.7
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 3.6
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 6.3
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 6.3
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.4
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 25 8.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 8.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 54/83 (65%), Positives = 60/83 (72%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGR 250
TG VYNVT ++GV++ K V R
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNR 83
Score = 101 bits (242), Expect = 6e-23
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 435
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 87 KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENN 146
Query: 436 KPVLLAPIPYE 468
+PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 54/83 (65%), Positives = 60/83 (72%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGR 250
TG VYNVT ++GV++ K V R
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNR 83
Score = 101 bits (241), Expect = 8e-23
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 435
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 87 KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENN 146
Query: 436 KPVLLAPIPYE 468
+PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.055
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +1
Query: 178 KDRSRVQRDCSCSRCDCQQACSRKD*PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEA 357
K R V RD + R D A RK+ +++ + E + K +Q + +V++ + LKE
Sbjct: 151 KSRETVYRDATGRRIDLVLA--RKEAKRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKEL 208
Query: 358 KAAGKTVNLKRQPAPPK 408
+ KTV L R P+
Sbjct: 209 ERQ-KTVPLARYEDDPE 224
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.3 bits (60), Expect = 0.68
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 173 HGKTGRVYNVTAHALGVIVNKRVRGRINRSASISVLSMSSTPSADKTSL 319
H K N G+ + R RGR +SA+ISV S PS ++ +L
Sbjct: 465 HHKGNMESNAEVSPDGMTLLPRKRGRPRKSANISVTSSPIRPSKNENNL 513
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 73 YSALHVHESVQSWRHCRHXRQWCSSKGYATQSIPW 177
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 114 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFV 4
S L+ F+ + IVPC+ + + ++P R EF+
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFL 779
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 441 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ 346
GF S+T SF+G W+ L + + G L G LQ
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQ 477
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 298 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 393
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 352 EAKAAGKTVNLKRQPAPPKAAHIVSGT 432
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 260 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 439
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 440 P 442
P
Sbjct: 115 P 115
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 372 LAGSLGFLQ*PLILFDSLKEVLSALGV 292
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 281 SMSSTPSADKTSLRE 325
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 319 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 447
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 97 SVQSWRHC-RHXRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSR 246
S+Q C +H RQ+C+ GY + S V SC C + A SR
Sbjct: 36 SLQKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVPY-YSCLMCKREIAASR 85
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 319 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 441
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 8.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 396 WLSLQVDGLAGSLGF 352
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,772
Number of Sequences: 5004
Number of extensions: 38095
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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