Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30765.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      140   8e-34
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.70 
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   1.6  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.6  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   3.7  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   4.9  
SB_39347| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.6  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    27   8.6  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  140 bits (338), Expect = 8e-34
 Identities = 62/84 (73%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD+  NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 182 TGRVYNVTAHALGVIVNKRVRGRI 253
           TGRVYNVT  ALGV+VNK+V+G+I
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKGKI 506


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 313 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 462
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 468
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 375
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 16  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHXRQW 138
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 16  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHXRQW 138
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 16  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHXRQW 138
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 16  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHXRQW 138
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
           K I +  EH + S C Q F +    N  + ++  + GKT  + +     K  HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +1

Query: 259  KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
            +++ +        K R + ++   + +RLL+++++  K   L++ P P  A  + +  E 
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593

Query: 439  PVLLAPIPYEF 471
            P+  A  P+ F
Sbjct: 1594 PIHQAASPFVF 1604


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 139 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 234
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_39347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 209 HALGVIVNKRVRGRINRSASI-SVLSMSSTPSADKTSLRE 325
           HA+  + ++  R R+  ++ I S++ + + PSAD +SLRE
Sbjct: 12  HAIETLKHRYGRKRVITTSLIKSIIRLQAKPSADASSLRE 51


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +2

Query: 164  KVYHGKTGRVYNVT-AHALGVIVNKRVR-GRINRSASISVLSMSSTPSADKTSLRESKRM 337
            ++ HG +    +V  AH +  +   R R   +N + +  +   SSTPS++K S    K  
Sbjct: 1891 RIPHGHSDDAADVAVAHCIANVQGPRTRTSGLNAAGTCHLQRRSSTPSSNKDSFEYKKHK 1950

Query: 338  RGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLS 460
                R  R+          + P K  + S ++   ++ RL+
Sbjct: 1951 EKSIRSSRITVASRKQDHFERPDKPLSISEDVNTTAFKRLN 1991


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 223 DCQQACSRKD*PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 402
           D      R D  +++N +   ++  +   +  KRV++N+RL +      K VN KR   P
Sbjct: 160 DALSTWKRDDIERKLNNKAREMESIRFNIENPKRVRDNKRLAQGGHEKAKVVN-KRTDGP 218


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 281 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 415
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 115  HC-RHXRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 228
            HC RH ++   +   AT+ +PW  KD S   R C  + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 175 WKDRSRVQRDCSCSRCDCQQACSR--KD*PKRINIRVEHVKHSKCRQDFLKRVKENERLL 348
           WK++  ++ +     C  Q+      K  P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,018
Number of Sequences: 59808
Number of extensions: 327604
Number of successful extensions: 1065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)