Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30765.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   124   5e-29
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    34   0.050
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    34   0.050
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    34   0.050
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    28   4.3  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    27   10.0 
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    27   10.0 

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  124 bits (298), Expect = 5e-29
 Identities = 58/84 (69%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI  NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 182 TGRVYNVTAHALGVIVNKRVRGRI 253
           TGR++NVT  A+G+IVNKRVRG I
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNI 84



 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
 Frame = +1

Query: 256 PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH-IVSG 429
           PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH + + 
Sbjct: 86  PKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQ 145

Query: 430 TEKPVLLAPIPYEFVA 477
             +P LLAP+ +E VA
Sbjct: 146 NNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 186 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPCVRNLR 49
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 186 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPCVRNLR 49
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 186 PVFPWYTLCGIPF*TAPLPXMSTMSPTLYTFMYVESGIVPCVRNLR 49
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 379 NLKRQPAPPKAAHIVSGTE 435
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 444 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 358
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 277 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 453
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 454 PI 459
           P+
Sbjct: 419 PV 420


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 444 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 358
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 103 QSWRHCRHXRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 240
           Q  RHC      C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 339 LILFDSLKEVLSALGVL 289
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 339 LILFDSLKEVLSALGVL 289
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 181 DRSRVQRDCSCSRCDCQQACSRKD*PKRI 267
           D  R++  CS   C C+Q C  K+ PK++
Sbjct: 78  DCLRIKEGCS-KLCACKQICKNKEAPKKL 105


>U97194-9|AAB52452.1|  336|Caenorhabditis elegans Hypothetical
           protein C37A2.8a protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 155 MPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRINRSASISVLSMSSTPSADKTSLRESKR 334
           +P   +H +  RVY  +   L +  NKR +  I +     +L MS     DK   +E+++
Sbjct: 189 IPEHYHHSEEQRVYGTSHMRLSLNENKR-KEEIEK-----LLEMSKKTDMDKAKKKETEK 242

Query: 335 MRGY*RKPRL 364
            R   R+ +L
Sbjct: 243 HRDILRREKL 252


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 274 RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLA 453
           R+  V+  +  ++  +R KE+E      +   + + + R P PP    I       + L 
Sbjct: 214 RITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPPPPNIPLP 273

Query: 454 PIPYE 468
            IP E
Sbjct: 274 TIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 274 RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLA 453
           R+  V+  +  ++  +R KE+E      +   + + + R P PP    I       + L 
Sbjct: 214 RITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPPPPNIPLP 273

Query: 454 PIPYE 468
            IP E
Sbjct: 274 TIPQE 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,388
Number of Sequences: 27780
Number of extensions: 227852
Number of successful extensions: 862
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)