Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30765.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 117 5e-27
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 117 5e-27
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 115 2e-26
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 115 2e-26
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 33 0.11
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 1.7
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 29 2.3
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 3.0
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.0
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.0
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 5.3
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa... 27 5.3
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 7.0
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.0
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 27 7.0
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 7.0
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 7.0
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 7.0
At5g63320.1 68418.m07946 expressed protein 27 9.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 9.3
At3g52020.1 68416.m05706 serine carboxypeptidase S10 family prot... 27 9.3
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 27 9.3
At1g54926.1 68414.m06272 hypothetical protein 27 9.3
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 117 bits (281), Expect = 5e-27
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGRINRS-ASISVLSMSSTPSADKTSLRESK 331
TGR++NVT A+GV VNK++ RI R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTL 146
Query: 439 PVLLAPIPYEFV 474
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 117 bits (281), Expect = 5e-27
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGRINRS-ASISVLSMSSTPSADKTSLRESK 331
TGR++NVT A+GV VNK++ RI R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTL 146
Query: 439 PVLLAPIPYEFV 474
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 115 bits (277), Expect = 2e-26
Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGRINRS-ASISVLSMSSTPSADKTSLRESK 331
TGR++NVT A+GV VNK++ RI R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTL 146
Query: 439 PVLLAPIPYEFV 474
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 115 bits (277), Expect = 2e-26
Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIXGNGAVQKGMPHKVYHGK 181
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 182 TGRVYNVTAHALGVIVNKRVRGRINRS-ASISVLSMSSTPSADKTSLRESK 331
TGR++NVT A+GV VNK++ RI R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +1
Query: 259 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 438
KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTL 146
Query: 439 PVLLAPIPYEFV 474
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +2
Query: 152 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRINRSASISVLSMSSTPSADKTSLRESK 331
G P K Y+G GR+ AHAL NK + R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 332 RMRGY 346
GY
Sbjct: 240 GKNGY 244
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 127 DVYNVSNFVHFHVRGERNSSM 65
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 101 YKVGDIVDIXGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 232
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 139 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 231
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 262 RINIRVEHVKHSKCRQDFLKRVKENERL 345
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 281 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 445
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 268 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 381
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger proteins
RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
[Arabidopsis thaliana] GI:3790593; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 202
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 208 SCSRCDCQQACSRKD*PKRINIRVEHVKHSKCRQDFLKR 324
SCS C S K P R++ HV HS C ++LKR
Sbjct: 152 SCSICLQSLVSSSKTGPTRMSC--SHVFHSSCLVEWLKR 188
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 61 HTWNYSALHVHESVQSWRHCRHXRQWCS 144
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = -1
Query: 235 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIAXDVYNVSNFVHFHVRGERN 74
L N S V + + FVW LLN DV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 145 SKGYATQSIPWKDRSRV--QRDCSCSRCDCQQACSRKD 252
SK YA QS WK +++ RD RCDC SRKD
Sbjct: 165 SKFYAVQS-DWKAHTKICGTRDY---RCDCGTLFSRKD 198
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 139 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 231
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 139 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 231
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 139 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 231
C KGY+ ++ +DR ++ D C+ D Q
Sbjct: 259 CEEKGYSVINVSCEDRPKLMFDIVCTLTDMQ 289
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 304 RQDFLKRVKEN-ERLLKEAKAAGKTVNLKRQPAPPKA 411
R++F KR++E ERL EAKAA + + A KA
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARRKAKAEAAEKA 139
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 26.6 bits (56), Expect = 9.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 106 SWRHCRHXRQWCSS 147
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At3g52020.1 68416.m05706 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 501
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 464 YGIGASKTGFSVPLTMWAALGGAGC 390
Y + A+KT S+PL +W GG GC
Sbjct: 111 YFVEATKTKKSLPLVLWLN-GGPGC 134
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 145 SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKD 252
SK YA S WK S++ C RCDC SRKD
Sbjct: 151 SKKYAVMS-DWKAHSKI---CGTKEYRCDCGTLFSRKD 184
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 220 CDCQQACSRKD*PKRINIRVEHVKHSK 300
CD + C + PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,881
Number of Sequences: 28952
Number of extensions: 212928
Number of successful extensions: 725
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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