Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30764.Seq
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 155 5e-39
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 155 5e-39
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.55
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.55
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 1.3
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 3.9
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.1
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 6.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 6.8
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.0
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 155 bits (376), Expect = 5e-39
Identities = 67/101 (66%), Positives = 91/101 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
+A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDV 151
Score = 88.6 bits (210), Expect = 6e-19
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 155 bits (376), Expect = 5e-39
Identities = 67/101 (66%), Positives = 91/101 (90%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
+A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+
Sbjct: 111 EVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDV 151
Score = 88.6 bits (210), Expect = 6e-19
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATK 51
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 535 PSTVHPTELAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 389
P+ +P L+ PR T +R + + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 0.55
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 538 LPSTVHPTELAVPRISFTEPERYRAIDLFLMIFAMPI-TSSREMLPL 401
LPS +L V R+ ++PE DLFL I A+ + TSS+ +LPL
Sbjct: 1465 LPSLPPLIDL-VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +3
Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 449
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 450 RNRSMARYLSGSVKEI 497
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 3.9
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 342 IIRALKEPPRD-RKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTASS 515
I+R +KE + RK +K + G+IS DVI ++ + YL KE+LG AS+
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 404 RQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 398 TQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRD 496
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 383 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 276
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 517 TELAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRG 365
TE+++ E Y LFL+ F + T +L L + FC + G
Sbjct: 2 TEMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 269 ETLPVLVALAMSSPTFLGDRPRGPILGAKDDVAP 168
E +PV ++ SP L D R +L ++AP
Sbjct: 1017 ELIPVFASVLTGSPEQLNDELRSELLSMVKEIAP 1050
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 182 DDVAPTSPPTHRKFTILI 129
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,731
Number of Sequences: 5004
Number of extensions: 54772
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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