Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30764.Seq
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 165 3e-41
02_05_0416 + 28791512-28792012 161 4e-40
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 31 0.99
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 4.0
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 4.0
03_06_0776 - 36176390-36177589 29 4.0
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 28 5.3
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 7.0
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.0
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 7.0
07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275... 27 9.2
07_03_0574 - 19629875-19631032 27 9.2
>04_04_1026 + 30214437-30214937
Length = 166
Score = 165 bits (400), Expect = 3e-41
Identities = 76/101 (75%), Positives = 93/101 (92%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
IA+IMRNRSMA+ ++G+VKEILGT SVGCTV+G+ P DL
Sbjct: 112 EIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
>02_05_0416 + 28791512-28792012
Length = 166
Score = 161 bits (391), Expect = 4e-40
Identities = 74/101 (73%), Positives = 92/101 (91%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
IA++MR RSMA+ ++G+VKEILGT SVGCTV+G+ P DL
Sbjct: 112 EIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET 50
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 240 CQGHKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 386
C W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 27 CAAQGYWYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 256 SLWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 146
S+W C H P+ E D E R GP L R I+
Sbjct: 1181 SMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 142 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTG 261
N +C G E G S AP++ PLG+ PK G+ IA + G
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIAPSLALG 771
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 384 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 473
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -1
Query: 532 STVHPTELAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRGGSLR 353
S+ P LA I +E + + I+LF + + S + L+F + G + R
Sbjct: 631 SSYRPVPLAQQYIGISERDYAKKIELFNTLCYEKVVESIKQGHQALVFVHTRKDTGKTAR 690
Query: 352 ALMIRAAAEGTTAIWAC 302
L+ AA G +++C
Sbjct: 691 TLIDLAANAGELELFSC 707
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 389 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 502
K+ + LP RCN+ C + + P PF S+ W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 228
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>07_03_1173 -
24526632-24526755,24527057-24527226,24527441-24527506,
24527858-24527953,24528340-24528438,24528730-24528819,
24529016-24529111,24529561-24529654,24530254-24530351,
24530395-24530679
Length = 405
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 592 IHQWSXSAVESSIRSCGGLPSTVHPTELAVPRISFTEPER 473
+HQ A+ +R CG +P P+E+ + F ER
Sbjct: 310 LHQELPDAILRQVRECGHIPHVEKPSEVLKHVLDFLGTER 349
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 436 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 308
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,511,934
Number of Sequences: 37544
Number of extensions: 401715
Number of successful extensions: 1098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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