Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30764.Seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   155   2e-38
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    61   7e-10
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    30   1.2  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    30   1.2  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    30   1.2  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    30   1.2  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    30   1.2  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    30   1.2  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81498-1|CAB04086.1|  692|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U12682-1|AAB63525.1|  692|Caenorhabditis elegans celfurPC protei...    27   8.3  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   8.3  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  155 bits (376), Expect = 2e-38
 Identities = 68/103 (66%), Positives = 91/103 (88%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           +DWKGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I
Sbjct: 51  QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTII 110

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDLID 560
            IA+IMR RSMA+ L G+VKEILGTA SVGCT++G+ PHD+I+
Sbjct: 111 KIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIE 153



 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT+  +  +  C
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +3

Query: 447 MRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDLID 560
           MR RSMA+ L G+VKEILGTA SVGCT++G+ PHD+I+
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIE 38


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7
           K R   +D L +L TI      GWVW+  G + NVQR
Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P L  +  S   F
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 200 VLLVCLLKRWVMTLPR--PQGLEGSQDHCAADSS 295
           +L++CLLKRW M L    PQ +    D+   + S
Sbjct: 180 ILMICLLKRWKMNLVEKFPQNITKHMDYTPVNIS 213


>Z81498-2|CAB04085.1|  760|Caenorhabditis elegans Hypothetical
           protein F11A6.1b protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +1

Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
           +R  GG+V   + LA K G   L P   GD      D  K +R+ R +RSL + Q + ++
Sbjct: 64  VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123


>Z81498-1|CAB04086.1|  692|Caenorhabditis elegans Hypothetical
           protein F11A6.1a protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +1

Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
           +R  GG+V   + LA K G   L P   GD      D  K +R+ R +RSL + Q + ++
Sbjct: 64  VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123


>U12682-1|AAB63525.1|  692|Caenorhabditis elegans celfurPC protein
           protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +1

Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
           +R  GG+V   + LA K G   L P   GD      D  K +R+ R +RSL + Q + ++
Sbjct: 64  VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37
           F+W    GH + Y  +    +  +P  W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,130
Number of Sequences: 27780
Number of extensions: 317065
Number of successful extensions: 819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)