Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30764.Seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   162   2e-40
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   157   6e-39
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           156   1e-38
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    36   0.029
At2g31890.1 68415.m03896 expressed protein                             28   4.4  
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    28   4.4  
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c...    28   5.8  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  162 bits (393), Expect = 2e-40
 Identities = 76/104 (73%), Positives = 92/104 (88%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDLIDD 563
            IAKIMR RS+A+ LSG+VKEILGT  SVGCTV+G+ P DL ++
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEE 155



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  157 bits (381), Expect = 6e-39
 Identities = 73/101 (72%), Positives = 89/101 (88%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
            IA+IMR RS+A+ LSG+V+EILGT  SVGCTV+G+ P DL
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDL 152



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  156 bits (379), Expect = 1e-38
 Identities = 72/101 (71%), Positives = 89/101 (88%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASSVGCTVEGRPPHDL 554
            IA+IMR RS+A+ LSG+V+EILGT  SVGCTV+G+ P D+
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDI 152



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/50 (72%), Positives = 42/50 (84%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -1

Query: 580 SXSAVESSIRSCGGLPST-VHPTELAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLP 404
           S  +V  +I  CGG+PS  + P  + +PR       R+ ++   + I    + ++  +L 
Sbjct: 618 SAMSVFGNINLCGGIPSLQLQPCSVELPR-------RHSSVRKIITICVSAVMAALLLLC 670

Query: 403 LCLIFFCFLRSRGGSLRA 350
           LC+++ C+ + R  S+RA
Sbjct: 671 LCVVYLCWYKLRVKSVRA 688


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 360 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 467
           +PP+ RKKQKN K     +LED  G+   +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 445 IFAMPITSSREMLPLCLIFFCFL 377
           IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124


>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to DEAD box
           protein DDX1 [Gallus gallus] GI:16323037,  ryanodine
           receptor [Caenorhabditis elegans] GI:1871447; contains
           Pfam profile PF00622: SPRY domain
          Length = 509

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 413
           HK  K L     + V+  +    V+PS A ++  A        KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,853
Number of Sequences: 28952
Number of extensions: 305038
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)