Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30763.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 30 0.40
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 28 1.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 5.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 5.0
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 26 5.0
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 5.0
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 6.6
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 11 IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 157
I FY+ AR +I + Q+ G GP KG A+K H I +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 313 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDY 474
DL + E+L G L I T F E R+ F N +CAA R+FV +DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDY 164
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 359 SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWV 508
SA +Y I ++VPN+ L P ++A A + LT +LG + LW+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWI 2061
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 389 FMNVVPNLLILVPIFLFALLHAASYSLTIL 478
F+ V+PN+ +L+P F+ + + Y L +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 207 TCSHCLTIQCRHSTKRTRERCDFSAAGYI 293
TCS LTI CR + + C+ G+I
Sbjct: 500 TCSETLTIPCRCTANEVQVTCEQLQNGFI 528
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 250 FVECRHWIVKQWEHVSNGTQHGDYADPPKSYVY--FIGNDV 134
+VE R+ ++ EHV + Q+ DY++ S +Y F+ DV
Sbjct: 493 WVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDV 533
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 157 RSSLGGPRNHRAVYHWIRV--PIV-*QSSVGILQSVLANAATSALRATSKNSSTRDLPLA 327
R LG R HRA HWI+ P V +S + +S+ N + + + S R + L
Sbjct: 363 RDLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTNITSDSDRPDKRIMMLT 422
Query: 328 GFHG 339
G G
Sbjct: 423 GLAG 426
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 317 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 415
S S++ +A FF+ D YLFY+L F+ VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467
>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 356 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVLV 514
D+ +LF S I V L ILV F+F +A + ++D + N+L +L+
Sbjct: 38 DNYDFLFMSFISFIVSCRLFILVFTFIFKGFPSAIQVIAMIDAV-VNALLILI 89
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 272 LQRCGLHQRIPAREISLSRDFMARFFLEDSAHYLF 376
LQ + QRIP ISL RD+ A F + ++ F
Sbjct: 218 LQLAVIGQRIPNSNISLPRDWEAPLFFKVKSNQQF 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,950
Number of Sequences: 5004
Number of extensions: 62449
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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