Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30763.Seq
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 29 3.0
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 3.0
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 29 5.2
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 5.2
12_01_0134 + 1017278-1018540,1018626-1019882 28 6.9
11_01_0131 + 1086916-1088127,1088213-1089469 28 6.9
10_01_0313 + 3447065-3448204 28 6.9
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592... 28 6.9
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 28 9.1
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = -1
Query: 367 VSAVLQEEPRHEIPREGDLSCWNSLM*PAALKSQRSRVRFVECRHWIVKQWEHVSNGTQH 188
+ V +E+ E REG+L N+ A S + + E VK W+HVSNG +
Sbjct: 102 IKTVAEEKSYVERRREGELLAPNTAR---AKFSSQCGIIVREKIPITVKDWDHVSNGDKE 158
Query: 187 GDYADPPKSYVYFIGNDVS 131
+ + K + + G++++
Sbjct: 159 VLWKELKKIFQFLDGSEIA 177
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 119
VK W+HVSNG + + + K + + G++ S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 553 LRAAALAEIVLFPVVLIMALFGHCGLMSPFVYYYFVDVEVRVAPEPVHPQ 702
+RA L + V + A+FGH + P ++ V V +R P PV PQ
Sbjct: 561 IRAPGLGLVYSEIVKGVPAIFGHFLIALPAIHSIIVFVCIRNVPVPVVPQ 610
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 306 AGIL*CSPQR*SRSVREYAL*NADTGLLNNGNTYPMVHSTVITRTPQRATSILL 145
+GIL + +RSV + DT +N+GNT P + T+ + TP + T L+
Sbjct: 953 SGILPAFTEDIARSVNVVHV--VDTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>12_01_0134 + 1017278-1018540,1018626-1019882
Length = 839
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 329 PARGRSLVLEFFDVARSAEVAAFASTLCRMPTLD 228
P G +V FF + EVAA A+ + R PT+D
Sbjct: 642 PGGGYRVVALFFGGSDDREVAALATRMVRNPTID 675
>11_01_0131 + 1086916-1088127,1088213-1089469
Length = 822
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 329 PARGRSLVLEFFDVARSAEVAAFASTLCRMPTLD 228
P G +V FF + EVAA A+ + R PT+D
Sbjct: 625 PGGGYRVVALFFGGSDDREVAALATRMVRNPTID 658
>10_01_0313 + 3447065-3448204
Length = 379
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 200 IGYVFPLFNNPVSAFYKAYSRTLRLQRCGLHQRIPAREISL 322
+G+ FP +PV +F + T H+ +P REI L
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGL 120
>03_03_0071 +
14257840-14257953,14259031-14259167,14259196-14259246,
14260396-14260499,14260887-14261020
Length = 179
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 353 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 454
ED +L + LIFM + +LIL +F+ + HA
Sbjct: 71 EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 664 VEVRVAPEPVHPQHVPRAPRGRP 732
+E V+P PV+P VPR R RP
Sbjct: 377 IEPAVSPPPVNPLPVPRTKRLRP 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,243,927
Number of Sequences: 37544
Number of extensions: 442073
Number of successful extensions: 1467
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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