Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30763.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26)              29   4.0  
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)                 28   9.2  
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 657  EVVVYERTHQAAVTEQCHDEYDREQH-DLGERRGPEDVPRLE 535
            +VV    TH A VT  CH+E    +H D GE+   E V +LE
Sbjct: 1273 QVVAAHHTHLAMVTGLCHEEMVLLKHIDKGEQDFVEYVAQLE 1314


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 678 DAYFHV--HEVVVYERTHQAAVTEQCHDEYDREQHDLGERRGPEDVP 544
           D + HV  H   V     +  + EQ H+EY    H + +   PEDVP
Sbjct: 16  DWWIHVILHNGSVVTVAREFLLHEQQHEEYSVPAHSMAQVPQPEDVP 62


>SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26)
          Length = 366

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 657 EVVVYERTHQAAVTEQCHDEYDREQHDLGERRGPEDVPR 541
           + VV E  H       C D  DREQ  +    G +DVP+
Sbjct: 177 KTVVSEIQHMERALRACEDTRDREQARVDNGSGLQDVPK 215


>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
          Length = 192

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 606 HDEYDREQHDLGERRGPEDVPRLELDQGDEQTSTHNE 496
           +D+ + ++HD GER   E+  R + ++ D++   H+E
Sbjct: 140 NDDEEEDRHD-GERNDDEEEDRHDEERNDDEEDRHDE 175


>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 501 CGCSSAHLPGRVPVAEHPPGRGAR 572
           C  S AH   R+P   HPP R AR
Sbjct: 426 CVLSRAHRDPRLPTGWHPPTRNAR 449


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 702 LRVYGFRRDAYFHVHEVVVYERTHQAAVTEQCHDEYDREQ 583
           + VY        ++H   +Y+ +H A + EQ H EY   +
Sbjct: 62  IEVYHDMEQRIIYLHLQSLYDASHLANLAEQAHKEYSNSE 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,688,709
Number of Sequences: 59808
Number of extensions: 495736
Number of successful extensions: 1490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)