Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30763.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    83   3e-16
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    32   0.38 
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    29   4.6  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.6  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.6  
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    28   8.1  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    28   8.1  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
 Frame = +2

Query: 104 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKAYSRTLRLQ 277
           PP    ++  ++ AN ++  L+  RV+TV   + Y+ P     P  SA+YK ++ +    
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 278 RCGLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 457
              LH RI   + +L+  F+ R  +EDS HYL YS++F+   P  +  +P+ ++A LHA 
Sbjct: 91  ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149

Query: 458 SYSLTILDTLGQNS 499
           ++   IL   G  S
Sbjct: 150 TFMTKILRETGHTS 163



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 538 QSRNILRAAALAEIVLFPVVLIMALFGHCGLMSPFVYYYFVDV 666
           Q++N L   A +EI L P+++ +   G   L+ PF YY F+ +
Sbjct: 176 QTQNALGIIACSEIFLVPLLVSLIFSGKGSLLLPFAYYRFLSL 218



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 668 KYASRRNPYTRNTFRELR 721
           +YASRRNP TR  F ++R
Sbjct: 219 RYASRRNPSTRQAFAQMR 236


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +2

Query: 224 NNPVSAFY---KAYSRTLRLQRCGLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFM 394
           + P++A Y     Y+  L LQ+  L   +  R ISL R+F+   +++ + H +F S+   
Sbjct: 201 SQPLAAVYFGLSVYASKLGLQK--LKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLG 258

Query: 395 NVVPNLLILVPIFLFALLHAASYSLTILDTL 487
               + +I +P  +  +L A       L TL
Sbjct: 259 IFFLSFIIWIPSNMSYILTAMCTQHGSLSTL 289


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 280 LRATSKNSSTRDLPLAGFHGEV 345
           L +TS     +D+PL GFHGE+
Sbjct: 320 LNSTSSFEPLKDVPLCGFHGEI 341


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 310 RDLPLAGFHGEVLPGGQRSLFILFTH 387
           R L LA FHG+ +P G+   F + TH
Sbjct: 640 RKLELAQFHGQGIPAGKAFTFTVLTH 665


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 310 RDLPLAGFHGEVLPGGQRSLFILFTH 387
           R L LA FHG+ +P G+   F + TH
Sbjct: 589 RKLELAQFHGQGIPAGKAFTFTVLTH 614


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 310 RDLPLAGFHGEVLPGGQRSLFILFTH 387
           R L LA FHG+ +P G+   F + TH
Sbjct: 587 RKLELAQFHGQGIPAGKAFTFTVLTH 612


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 61  NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 180
           + YGR  ++SRR +  ++ PS  S+ H   N R+SL  P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 525 GDEQTSTHNEF*PRVSRIVKEYEAACSSANKKIGTNI 415
           G    +T+N+   +V+  V+EY  + +S    +GTNI
Sbjct: 368 GSAYVNTYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 525 GDEQTSTHNEF*PRVSRIVKEYEAACSSANKKIGTNI 415
           G    +T+N+   +V+  V+EY  + +S    +GTNI
Sbjct: 368 GSAYVNTYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 409 FVNIGANLFICAATRRFVFLDYP*YSWSK 495
           FV++G ++FI  A   F+F D P  SW++
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 371 LFYSLIFMNVVPNLLILVP 427
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 281 CGLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAAS 460
           CG   R+  + I   ++ M+    E   H    +L F N++P ++I  P+FL A     S
Sbjct: 225 CG--SRLVWKAIDRRKNNMSFKSYETHRHLTLLAL-FQNLIPAVVIAFPVFLVAFSFVMS 281

Query: 461 Y 463
           Y
Sbjct: 282 Y 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,701
Number of Sequences: 27780
Number of extensions: 361591
Number of successful extensions: 1506
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)