Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30763.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20580.2 68418.m02444 expressed protein predicted protein, Ar...    30   1.4  
At5g20580.1 68418.m02443 expressed protein predicted protein, Ar...    30   1.4  
At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    30   1.4  
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    29   4.3  
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    28   5.7  
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical...    28   5.7  
At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical...    28   5.7  
At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical...    28   5.7  
At5g61160.1 68418.m07673 transferase family protein similar to a...    28   7.6  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    27   10.0 

>At5g20580.2 68418.m02444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -3

Query: 644 TNGLIKPQ*PNNAMMSTTGNSTISASAAARRMFRDWNSTREMSRRAPTTNFDQEYQG*SR 465
           TNG   PQ     +++T      + SA   ++  + N  R +      +  D+E Q   R
Sbjct: 240 TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSL-----ISERDREIQH-VR 293

Query: 464 NTKRRVAAQIKRLAPILTNWARRS*K*VNRINSER 360
           NT  +  A+ +RL  IL  W+ R+ K    +  ER
Sbjct: 294 NTNNQYVAENERLRAILGEWSMRAAKLERALEVER 328


>At5g20580.1 68418.m02443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -3

Query: 644 TNGLIKPQ*PNNAMMSTTGNSTISASAAARRMFRDWNSTREMSRRAPTTNFDQEYQG*SR 465
           TNG   PQ     +++T      + SA   ++  + N  R +      +  D+E Q   R
Sbjct: 240 TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSL-----ISERDREIQH-VR 293

Query: 464 NTKRRVAAQIKRLAPILTNWARRS*K*VNRINSER 360
           NT  +  A+ +RL  IL  W+ R+ K    +  ER
Sbjct: 294 NTNNQYVAENERLRAILGEWSMRAAKLERALEVER 328


>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 GNDVSFQGWDAFWWTSVAC 89
           GN V  QGW+  WW+   C
Sbjct: 38  GNKVCTQGWECSWWSKYCC 56


>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 590 GNSTISASAAARRMFRDWNSTREMSRR 510
           GNS + A A++R++   WN  R M RR
Sbjct: 465 GNSLVDAYASSRKVDYAWNVIRSMKRR 491


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189  CCVPLDT-CSHCLTIQCRHSTKRTRERCDFSAAGYIKEFQ 305
            C +P+ T C H L + C        ERC  S  GY+ E Q
Sbjct: 1055 CRLPVITPCRHLLCLDC---VALDSERCTISGCGYLYEMQ 1091


>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 612

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 530 TREMSRRAPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 408
           ++ MS  +PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 500 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 540


>At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 595

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 530 TREMSRRAPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 408
           ++ MS  +PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 483 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523


>At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 530 TREMSRRAPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 408
           ++ MS  +PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 483 SQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523


>At5g61160.1 68418.m07673 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 452

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 292 SKNSSTRDLPLAGFHGEVLPGGQRSLFILFTHF 390
           +++SS+RD+    F+  +LP  +RSL ++ THF
Sbjct: 47  TESSSSRDV----FYSSILPKLERSLSLILTHF 75


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  NFNTLNQYGRSKSASRRHWSTKRHPSLE 129
           +F +  Q G   S+S++HW  +R P  E
Sbjct: 401 HFASWRQLGHLLSSSKKHWGMRRQPKSE 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,486
Number of Sequences: 28952
Number of extensions: 330815
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)