Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30762.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   7.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   7.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   7.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   7.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   7.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 VTVPTRKGIKETQNVKSQDXXSG 365
           VTVP  KG+  + NV S+   +G
Sbjct: 82  VTVPRYKGVPSSLNVISEKIGNG 104


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 674 GSDKNRCEISRQEGGRXSPQT 736
           GSD+     S  EGG+ SP +
Sbjct: 566 GSDEEIINSSNDEGGKTSPNS 586


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 55  SYRKYRETSKERSRDRKERERSKEPK 80


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 288 SYRKYRETSKERSRDRKERERSKEPK 313


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPK 284
           S R      KE  R RKE +   EPK
Sbjct: 288 SYRKYRETSKERSRDRKERERSKEPK 313


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 177 VQEKSVSVHYSHTVGILHCD 118
           +Q+   SVH+ H  G++H D
Sbjct: 15  IQQILESVHHCHHNGVVHRD 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,573
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)