Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30762.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             31   0.81 
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    29   2.5  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    29   4.3  
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi...    27   10.0 
At5g54020.1 68418.m06719 expressed protein                             27   10.0 
At1g43970.1 68414.m05072 hypothetical protein                          27   10.0 

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKG-KPEPKPAKGVTVPTRKGIKETQNVKSQDXXSGEQQK 377
           E  Q   + S K  KG K E K AK V     K +  T+N       SGE  K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
            protein contains InterPro entry IPR000504: RNA-binding
            region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +3

Query: 147  SSEQIRSFLGR*DRSS*CVKSARAGE--GAQKEDQRSR-KENKGKPEPKPAKGVTVPTRK 317
            S E+ +S +   D ++   +  R  E   + K+ Q  R KE   KP+PK +K ++ P ++
Sbjct: 877  SKEEAKSNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQKETTEKPDPKISKDLSEPRKR 936

Query: 318  GIKETQNVKSQDXXSGEQQKGKG 386
               E +  ++++     +++G+G
Sbjct: 937  KFGEDRGEENRNGQRKRKKQGQG 959


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGK-PEPKPAKGVTVPTRKGIKETQNVKSQDXXSGEQQKGK 383
           E  +KED  S++E+K + PE K  +  +      IKET+  + ++  S E  + K
Sbjct: 354 EKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNENK 408


>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor [GI:3168840];
           nearly identical to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 355

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK-GIKETQNVKSQDXXSGEQQ 374
           ++A A EG +KE+++   E+KG+ E K  K  T   +K G       ++ D   GE++
Sbjct: 248 EAAAAAEGEKKEEEKGEGESKGE-EGKDDKAKTDEEKKEGDGGKGEGEAADNGGGEEE 304


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 41  DKMSPY*CAESNPITSKYCVIKSSR 115
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


>At1g43970.1 68414.m05072 hypothetical protein
          Length = 239

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 252 RKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXXSGEQQKGKG 386
           R      P      GV+  T +  K  ++  S++  S +QQKGKG
Sbjct: 67  RNRQNSVPMSTEVPGVSSVTSRLAKRKRDTPSEEFLSQKQQKGKG 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,134
Number of Sequences: 28952
Number of extensions: 200143
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)