Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30761.Seq
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 165 6e-40
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 162 3e-39
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 159 3e-38
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 134 1e-30
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 125 5e-28
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 125 5e-28
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 120 2e-26
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 109 3e-23
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 104 1e-21
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 103 3e-21
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 101 1e-20
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 100 4e-20
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 73 3e-12
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 68 1e-10
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 64 2e-09
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 56 6e-07
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 35 1.2
UniRef50_Q0UCV4 Cluster: Putative uncharacterized protein; n=1; ... 32 8.2
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 165 bits (400), Expect = 6e-40
Identities = 86/150 (57%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLN+S+PATGCQ L V DE KLR FYE R EV AD LG+EW GYV+R++ GNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S LVIV+ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-SKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD VPRRLGPKRAS+IRKLFNLS+
Sbjct: 120 DIPGLTDTTVPRRLGPKRASRIRKLFNLSK 149
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 162 bits (394), Expect = 3e-39
Identities = 83/150 (55%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVS+PATG Q F V+D+HKLR FY+ R AE+ AD LGDEW GYV ++A GNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLTN+RVRLL+ H R + V + + S AL++V+ G +
Sbjct: 61 FPMKQGVLTNTRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD V RRLGPKRAS IRKL+NL++
Sbjct: 120 DIPGLTDTTVLRRLGPKRASNIRKLYNLTK 149
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 159 bits (386), Expect = 3e-38
Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLN+SYP TGCQ L + DE K+R FY+ R EV + LGDEW GYV R+ GNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM G++TN RVRLL+ H R + V + S +LVIV+ G Q
Sbjct: 61 FPMKQGIMTNGRVRLLL-SKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQ 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKR KIRK+FNLS+
Sbjct: 120 DIPGLTDNTIPRRLGPKRVGKIRKMFNLSK 149
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 134 bits (323), Expect = 1e-30
Identities = 70/150 (46%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MK N+SYP TG Q + D+ K IF++ R VEAD LG+E+ GYVL++ GNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFV-XVLLTPISRSWALVIVRXGAQ 379
FPM GVL RVR+LM H R + + + ++ R AL +V+ GA
Sbjct: 61 FPMRQGVLFKGRVRILM-RKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGAN 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
EI GLTD NVPRRLGPKR +K+R+LF +
Sbjct: 120 EIAGLTDQNVPRRLGPKRLTKLRRLFGFKK 149
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 125 bits (302), Expect = 5e-28
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLL 250
FPM GVLT+ R+RLL
Sbjct: 61 FPMKQGVLTHGRLRLL 76
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 125 bits (302), Expect = 5e-28
Identities = 65/149 (43%), Positives = 83/149 (55%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MK N+SYP TG Q + D+ K IF + + EVE D LGDE+ GYV ++A GNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQE 382
FPM GV+ RVRLL+ ++ P R AL IV+ G E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 383 IPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
I GLT +PR+LGPKRA+ I+KLF L +
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKK 149
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 120 bits (288), Expect = 2e-26
Identities = 66/149 (44%), Positives = 82/149 (55%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLN+S P Q + DE KL F E R V D +G+E+ GYV R+ GNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQE 382
FPM GVLTN+RVRLL ++ + L +V+ G E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 383 IPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
IPGLTD V ++LGPKRA+KIRKLFNL +
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDK 190
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 109 bits (262), Expect = 3e-23
Identities = 60/149 (40%), Positives = 81/149 (54%)
Frame = +2
Query: 26 KLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQGF 205
K+NV+YPATG F +E R F + R EV+A LGDE+ GY+L++ G DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 206 PMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQEI 385
PM GV TN+RVRLL+ ++ ++V+ G EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 386 PGLTDGNVPRRLGPKRASKIRKLFNLSQR 472
G+T+ +P R GP+RAS RKLFNLSQ+
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQK 149
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 262 HSCYXXXRDGXXXRKSVRGXIVDANLSVLGS 354
+ CY R+G RK+VRG IV ++SVL +
Sbjct: 80 NGCYKPLRNGERRRKTVRGAIVAGDISVLNT 110
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 104 bits (250), Expect = 1e-21
Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRI-FYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQ 199
MKLN++YP G F + DE R+ + R EV+ G E+ GY+ R+ G+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 200 GFPMXXGVLTNSRVRLLM*XAT--HVTXRXAM-EXXXVNQFVXVLLTPISRSWALVIVRX 370
GFPM GVL +SRV LL+ T R E N VL + I+ + I +
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALV-NVTISKV 119
Query: 371 GAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
G Q I G+TD PRRLGPKRASKIRKLFNLS+
Sbjct: 120 GDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSR 152
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 103 bits (246), Expect = 3e-21
Identities = 45/77 (58%), Positives = 56/77 (72%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLN+S+PATGCQ L DE K R FYE +EV AD LG+EW GY++R++ GNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM 253
FPM VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +2
Query: 377 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
++IPGLTD PR +GPKRAS+IRKLFNLS+
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSK 110
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 101 bits (241), Expect = 1e-20
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
M++ ++YP G Q + + D L YE R ++E ++LG ++ GY+ R+ G DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM-*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQ 379
FPM GV+T R+RLL+ A+ R E ++ IS + V+++ G +
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEIS-ALHCVVLQKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQRR 475
EI GLT VPRR GPKRAS +R +F ++ +
Sbjct: 120 EIDGLTTTAVPRRFGPKRASTLRAMFGITDSK 151
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 99.5 bits (237), Expect = 4e-20
Identities = 54/146 (36%), Positives = 76/146 (52%)
Frame = +2
Query: 26 KLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQGF 205
K+N+S P TG + D K + + R +E + LG+E+ G R+ GND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 206 PMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQEI 385
PM GVL + R RLL+ ++ P + ++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 386 PGLTDGNVPRRLGPKRASKIRKLFNL 463
PGLTD VP+RL PKRASKIR+LF L
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGL 153
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 73.3 bits (172), Expect = 3e-12
Identities = 31/77 (40%), Positives = 48/77 (62%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MK N++ P+TG Q + DE KLRI Y + ++++ +G EW + + G DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM 253
FPM G+L+ SRV++L+
Sbjct: 61 FPMKEGILSPSRVKILL 77
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 67.7 bits (158), Expect = 1e-10
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEW 157
MKLN+S+PATGCQ L V DE KLR FYE R EV AD LG+EW
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEW 45
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 64.1 bits (149), Expect = 2e-09
Identities = 42/100 (42%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 173 RVAXGNDKQGFPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVX-VLLTPISRSW 349
R GNDKQG VL RVR+LM H R + + + ++ R
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILM-RKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVL 114
Query: 350 ALVIVRXGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
AL +V+ GA EI GLTD NVPRRLGPKR +K+R+LF +
Sbjct: 115 ALQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKK 154
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 55.6 bits (128), Expect = 6e-07
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Frame = +2
Query: 65 LFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQGFPMXXGVLTNSRVR 244
+F + +++R+ Y+ + + + LG+E+ G ++ + G+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 245 LLM*XA--------THVTXRXAMEXXXVNQFVXVLLTPISRSWALVIVRXGAQEIPGLTD 400
L+ V R ++ V++ + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVL--------NLIILRPGEKEIDGLTN 111
Query: 401 GNVPRRLGPKRASKIRKLFNL 463
P++ K+RK+F +
Sbjct: 112 AVNDVSHLPRKEKKLRKMFGV 132
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 34.7 bits (76), Expect = 1.2
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -1
Query: 253 HQKTNTAVCQDAXXHRESLLVVAASDTKYIALPFI 149
H++ +T V Q A H E+LLVV D + ++LPF+
Sbjct: 177 HEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q0UCV4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1234
Score = 31.9 bits (69), Expect = 8.2
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -3
Query: 257 FTSEDEHGCLSGRXVSSGILACRCRXRHEVHSPXIHR----LTDQPLLRRXCAFRKRYEA 90
FT E +HG + G ++ + + + R + I+R L + P+L+R C A
Sbjct: 384 FTRESDHGSVEGVPATTAVTPPKSQDRPTIDPLRIYRRCCQLRESPILKRICDQLSSPSA 443
Query: 89 CARPPXRTTSGIPLPGTK 36
C+ + + L G++
Sbjct: 444 CSLAHPGVVTSLDLTGSR 461
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,155,353
Number of Sequences: 1657284
Number of extensions: 6460934
Number of successful extensions: 14220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14202
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -