Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.66 
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   2.7  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   2.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   3.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 78  TTSNNXWHPVAGYETFNFMTAXNPXE 1
           +TSNN WH   G  + N     NP +
Sbjct: 370 STSNNRWHNNNGNNSNNHWRKNNPND 395


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRI 100
           M ++   P+TG Q +  VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRI 100
           M ++   P+TG Q +  VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 205 ESLLVVAASDTKYIALPF-IA*LISLYFGXXAXFVKDTKLVLVHHXEQ 65
           ++L VVA + TK   LPF +  +I + F     FV  T+++ V + EQ
Sbjct: 97  QNLKVVATTKTKAWFLPFVVTNIIFVLFHTYEAFVW-TRIMGVAYYEQ 143


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 283 GAXCNMSGXLHQKTNTAVCQDAXXH 209
           G+  +MSG +HQ  N +    +  H
Sbjct: 196 GSWLDMSGGMHQMANYSTDYSSLTH 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,200
Number of Sequences: 336
Number of extensions: 1601
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)