Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   141   5e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   141   6e-35
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    31   0.13 
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   4.8  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  141 bits (342), Expect = 5e-35
 Identities = 75/150 (50%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MKLN+SYPA G Q L  + D+ +LR+F E R   EV  D +G E+ GYV ++  GNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
           FPM  GVL   RVRLL+  A H   R   +     + V   +     +  AL IV+ G Q
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
           +IPGLTD  VP+RLGPKRASKIR+ FNLS+
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSK 149


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  141 bits (341), Expect = 6e-35
 Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MKLN+SYPA G Q L  + D+ +LR+F E R   EV  D +G E+ GYV ++  GNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
           FPM  GVL   RVRLL+  A H   R   +     + V   +     +  AL I++ G Q
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
           +IPGLTD  VP+RLGPKRASKIR+ FNLS+
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSK 149


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 403 SISQSRNFLGTXAHNNKSPRPRDWRQQ 323
           SIS S++F  + ++ N+S +P DW QQ
Sbjct: 175 SISNSKSFGTSLSYYNRSSKPSDWNQQ 201


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  PGNGMPXVVRXGGRAQASYLLR 108
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,897
Number of Sequences: 5004
Number of extensions: 26125
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)