Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   128   2e-30
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   127   6e-30
06_01_0033 - 346273-347355                                             27   8.4  
01_07_0336 - 42833205-42834926                                         27   8.4  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  128 bits (309), Expect = 2e-30
 Identities = 71/152 (46%), Positives = 91/152 (59%), Gaps = 3/152 (1%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MK N++ P TGCQ    + D+ KLR FY+ R   EV  D LG+E+ GYV ++  G DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWA---LVIVRXG 373
           FPM  GVLT+ RVRLL+   T    R         +   V    +S+  +   LVIV+ G
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGT-PCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119

Query: 374 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
             ++PGLTD   PR  GPKRASKIRKLFNL++
Sbjct: 120 DNDLPGLTDTEKPRMRGPKRASKIRKLFNLAK 151


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  127 bits (306), Expect = 6e-30
 Identities = 71/152 (46%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MK N++ P TGCQ    + D+ KLR F++ R   EV  D LG+E+ GYV ++  G DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRSWA---LVIVRXG 373
           FPM  GVLT  RVRLL+   T    R         +   V    +S+  +   LVIV+ G
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGT-PCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119

Query: 374 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
             ++PGLTD   PR  GPKRASKIRKLFNLS+
Sbjct: 120 ENDLPGLTDTEKPRMRGPKRASKIRKLFNLSK 151


>06_01_0033 - 346273-347355
          Length = 360

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 335 ISRSWALVIVRXGAQEIPGLTDGNVPRR 418
           ++RS  LVIV  GA++IPG T  N+ +R
Sbjct: 103 LTRSSDLVIVTAGARQIPGETRLNLLQR 130


>01_07_0336 - 42833205-42834926
          Length = 573

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 463 KVEQLTDFGSTFGT*TAGYISISQSRNFLGTXAHNNKSPRP 341
           K  +   F   F T  A Y +   +R FL     NNK P P
Sbjct: 482 KARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSP 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,257
Number of Sequences: 37544
Number of extensions: 191826
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)