Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              117   6e-27
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   8.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  117 bits (281), Expect = 6e-27
 Identities = 60/116 (51%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
 Frame = +2

Query: 125 EVEADQLGDEWXGYVLRVAXGNDKQGFPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXV 304
           EV  + LGDEW GYV R+  GNDKQGFPM  G++TN RVRLL+    H   R        
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLL-SKGHSCYRPRRTGERK 60

Query: 305 NQFVXVLLTPISRS-WALVIVRXGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
            + V   +     S  +LVIV+ G Q+IPGLTD  +PRRLGPKR  KIRK+FNLS+
Sbjct: 61  RKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSK 116


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 152 HRLTDQPLLRRXCAFRKRYEACARPPXRTTSGIPLP 45
           H ++ + L RR  A R+   ACAR P   ++  P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,210,305
Number of Sequences: 59808
Number of extensions: 220399
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)