Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30761.Seq
(499 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal prot... 177 5e-45
L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal prot... 177 5e-45
L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal prot... 177 5e-45
L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal prot... 177 5e-45
AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-P... 177 5e-45
AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-P... 173 8e-44
L02074-3|AAB05984.1| 200|Drosophila melanogaster protein ( Dros... 125 3e-29
L02074-2|AAB05983.1| 200|Drosophila melanogaster protein ( Dros... 125 3e-29
AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p pro... 121 5e-28
AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-P... 121 5e-28
AE013599-1733|AAF58364.1| 611|Drosophila melanogaster CG13330-P... 29 4.6
>L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 177 bits (432), Expect = 5e-45
Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S ALV+++ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 120 DIPGLTDTTIPRRLGPKRASKIRKLYNLSK 149
>L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 177 bits (432), Expect = 5e-45
Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S ALV+++ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 120 DIPGLTDTTIPRRLGPKRASKIRKLYNLSK 149
>L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 177 bits (432), Expect = 5e-45
Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S ALV+++ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 120 DIPGLTDTTIPRRLGPKRASKIRKLYNLSK 149
>L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 177 bits (432), Expect = 5e-45
Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S ALV+++ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 120 DIPGLTDTTIPRRLGPKRASKIRKLYNLSK 149
>AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-PB,
isoform B protein.
Length = 248
Score = 177 bits (432), Expect = 5e-45
Identities = 91/150 (60%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
FPM GVLT+ RVRLL+ H R + V + + S ALV+++ G +
Sbjct: 61 FPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEK 119
Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 120 DIPGLTDTTIPRRLGPKRASKIRKLYNLSK 149
>AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-PC,
isoform C protein.
Length = 251
Score = 173 bits (422), Expect = 8e-44
Identities = 89/148 (60%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +2
Query: 29 LNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQGFP 208
LNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQGFP
Sbjct: 6 LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65
Query: 209 MXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQEI 385
M GVLT+ RVRLL+ H R + V + + S ALV+++ G ++I
Sbjct: 66 MKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDI 124
Query: 386 PGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
PGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 125 PGLTDTTIPRRLGPKRASKIRKLYNLSK 152
>L02074-3|AAB05984.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 125 bits (302), Expect = 3e-29
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLL 250
FPM GVLT+ R+RLL
Sbjct: 61 FPMKQGVLTHGRLRLL 76
>L02074-2|AAB05983.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 125 bits (302), Expect = 3e-29
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = +2
Query: 23 MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
MKLNVSYPATGCQ LF VVDEHKLR+FYE R VEAD LGDEW GY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 203 FPMXXGVLTNSRVRLL 250
FPM GVLT+ R+RLL
Sbjct: 61 FPMKQGVLTHGRLRLL 76
>AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p
protein.
Length = 217
Score = 121 bits (292), Expect = 5e-28
Identities = 64/115 (55%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Frame = +2
Query: 128 VEADQLGDEWXGYVLRVAXGNDKQGFPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVN 307
VEAD LGDEW GY LR+A GNDKQGFPM GVLT+ RVRLL+ H R
Sbjct: 5 VEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKR 63
Query: 308 QFVXVLLTPISRS-WALVIVRXGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+ V + + S ALV+++ G ++IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 64 KSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSK 118
>AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-PA,
isoform A protein.
Length = 217
Score = 121 bits (292), Expect = 5e-28
Identities = 64/115 (55%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Frame = +2
Query: 128 VEADQLGDEWXGYVLRVAXGNDKQGFPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVN 307
VEAD LGDEW GY LR+A GNDKQGFPM GVLT+ RVRLL+ H R
Sbjct: 5 VEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLL-KKGHSCYRPRRTGERKR 63
Query: 308 QFVXVLLTPISRS-WALVIVRXGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
+ V + + S ALV+++ G ++IPGLTD +PRRLGPKRASKIRKL+NLS+
Sbjct: 64 KSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSK 118
>AE013599-1733|AAF58364.1| 611|Drosophila melanogaster CG13330-PA
protein.
Length = 611
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 143 TDQPLLRRXCAFRKRYEACARPPXRTT 63
TD PLLR C RYEA R P TT
Sbjct: 124 TDSPLLRTCCQ-SVRYEAMRRGPSNTT 149
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,722,823
Number of Sequences: 53049
Number of extensions: 311611
Number of successful extensions: 707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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