Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   149   1e-36

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  149 bits (360), Expect = 1e-36
 Identities = 79/150 (52%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           M+LN +YPATG Q  F V +E KLR+F+E R   EV  D LGDEW GYV+R+  GNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQFVXVLLTPISRS-WALVIVRXGAQ 379
           FPM  G+LTN RVRLL+        R         + V   +   + S  +LVIV+ G  
Sbjct: 61  FPMKQGILTNGRVRLLL-KKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDG 119

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
           EI GLTD  +PR+LGPKRASKIRKLFNL++
Sbjct: 120 EIEGLTDSVLPRKLGPKRASKIRKLFNLTK 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,556
Number of Sequences: 27780
Number of extensions: 155624
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)