Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30761.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   129   9e-31
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             128   2e-30
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   4.0  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  129 bits (312), Expect = 9e-31
 Identities = 70/151 (46%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MK NV+ P TGCQ    + D+ KLR FY+ R   EV  D LG+E+ GYV ++  G DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQ--FVXVLLTPISRSWALVIVRXGA 376
           FPM  GVLT  RVRLL+   T              +      +++P      LVIV+ G 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 377 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
            ++PGLTD   PR  GPKRASKIRKLFNL +
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKK 151


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  128 bits (309), Expect = 2e-30
 Identities = 69/151 (45%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +2

Query: 23  MKLNVSYPATGCQXLFXVVDEHKLRIFYEXRXXAEVEADQLGDEWXGYVLRVAXGNDKQG 202
           MK NV+ P TGCQ    + D+ KLR F++ R   EV  D LG+E+ GYV ++  G DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 203 FPMXXGVLTNSRVRLLM*XATHVTXRXAMEXXXVNQ--FVXVLLTPISRSWALVIVRXGA 376
           FPM  GVLT  RVRLL+   T              +      +++P      LVIV+ G 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 377 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSQ 469
            ++PGLTD   PR  GPKRASKIRKLFNL +
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGK 151


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,745
Number of Sequences: 28952
Number of extensions: 146037
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)