Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30759.Seq
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   6.2  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 236 QXWQXCLNLXGXLNKCGVXSPR-FDVP 313
           Q WQ  +     LNKC V  PR +D P
Sbjct: 125 QGWQNSIRHNLSLNKCFVKVPRHYDDP 151


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 340 SAPLTTVWLPSPYNKW 387
           SA + TVW+ S  N+W
Sbjct: 448 SAYVATVWINSVINRW 463


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 2   FFFFFWTVLSIR 37
           +FF FWT+L  R
Sbjct: 67  YFFNFWTILFSR 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,040
Number of Sequences: 336
Number of extensions: 1703
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)