Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30759.Seq
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          109   2e-24
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   100   6e-22
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           64   6e-11

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  109 bits (261), Expect = 2e-24
 Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L G LNKCGV SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKILGFLF 454
           GK+LGF +
Sbjct: 123 GKVLGFFY 130



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM K GYIGEFE VDD R G 
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  100 bits (240), Expect = 6e-22
 Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L G LNKCGV SPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63  VELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122

Query: 431 GKIL 442
           GK L
Sbjct: 123 GKEL 126



 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/62 (74%), Positives = 54/62 (87%)
 Frame = +3

Query: 69  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM K GYIGEFE VDD R G 
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 249 IV 254
           IV
Sbjct: 61  IV 62


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 26/66 (39%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = +2

Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
           + L G +  C   + R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++G
Sbjct: 62  VELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVG 121

Query: 431 GKILGF 448
           G++LG+
Sbjct: 122 GQVLGY 127



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGXI 251
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D  R G I
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,015,844
Number of Sequences: 37544
Number of extensions: 192606
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)