Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30759.Seq
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 108 2e-24
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 108 2e-24
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 108 2e-24
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 107 5e-24
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 103 9e-23
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 71 4e-13
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 70 1e-12
At1g18390.1 68414.m02297 protein kinase family protein contains ... 27 9.4
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 27 9.4
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 27 9.4
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
+ L G LNKCGV SPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFLF 454
GK+LGF +
Sbjct: 123 GKVLGFFY 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM K GYIGEFE VDD R G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
+ L G LNKCGV SPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFLF 454
GK+LGF +
Sbjct: 123 GKVLGFFY 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM K GYIGEFE VDD R G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 108 bits (260), Expect = 2e-24
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
+ L G LNKCGV SPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFLF 454
GK+LGF +
Sbjct: 123 GKVLGFFY 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM K GYIGEFE VDD R G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 107 bits (256), Expect = 5e-24
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
+ L G LNKCGV SPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK++G
Sbjct: 63 VELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVG 122
Query: 431 GKILGFLF 454
GK+LGF +
Sbjct: 123 GKVLGFFY 130
Score = 97.1 bits (231), Expect = 6e-21
Identities = 46/62 (74%), Positives = 53/62 (85%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM K GYIGEFE VDD R G
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 249 IV 254
IV
Sbjct: 61 IV 62
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 103 bits (246), Expect = 9e-23
Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
+ L G LN CGV SPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K++G
Sbjct: 69 VELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVG 128
Query: 431 GKILGFLF 454
GK+LGF +
Sbjct: 129 GKVLGFFY 136
Score = 93.5 bits (222), Expect = 7e-20
Identities = 45/62 (72%), Positives = 51/62 (82%)
Frame = +3
Query: 69 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGX 248
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM K GYI EFE VDD R G
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 249 IV 254
IV
Sbjct: 67 IV 68
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 70.9 bits (166), Expect = 4e-13
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
++L G +N C + R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++G
Sbjct: 62 VDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVG 121
Query: 431 GKILGFLF 454
G++LGF +
Sbjct: 122 GQVLGFFY 129
Score = 57.6 bits (133), Expect = 4e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +3
Query: 84 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGXI 251
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D R G I
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/66 (46%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +2
Query: 254 LNLXGXLNKCGVXSPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLG 430
++L G +N C + R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++G
Sbjct: 62 VDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVG 121
Query: 431 GKILGF 448
G++LGF
Sbjct: 122 GQVLGF 127
Score = 58.0 bits (134), Expect = 3e-09
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +3
Query: 84 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGXI 251
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D R G I
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 147 IRPCSKVIVKFLTVMMKXGYIGEFEIVDDXRXGXIV 254
+RPC + LT + G+ E ++VD + G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Frame = +2
Query: 275 NKCGVXSPRF-------DVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHE 406
N+CGV + RF V +ND W FGYL+ SG + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 192
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Frame = +2
Query: 275 NKCGVXSPRF-------DVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHE 406
N+CGV + RF V +ND W FGYL+ SG + E
Sbjct: 142 NECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,103,723
Number of Sequences: 28952
Number of extensions: 160174
Number of successful extensions: 275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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