Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30756.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 124 5e-29
11_01_0155 - 1287003-1287452 124 5e-29
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 31 0.58
07_03_0227 - 15398371-15398925 30 1.0
11_06_0598 - 25391923-25393197 28 5.4
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 5.4
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.4
03_06_0097 - 31632238-31632525,31633386-31633769 27 7.2
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 7.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 124 bits (299), Expect = 5e-29
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +2
Query: 227 QGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 406
+G S YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 407 GGPGARARYQKSYR 448
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 92.3 bits (219), Expect = 2e-19
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SMVXIRVTVKGGGHVAQV 254
+ +R+ V+GGG +Q+
Sbjct: 67 KDIDMRIRVRGGGKTSQI 84
>11_01_0155 - 1287003-1287452
Length = 149
Score = 124 bits (299), Expect = 5e-29
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +2
Query: 227 QGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 406
+G S YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 407 GGPGARARYQKSYR 448
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 92.3 bits (219), Expect = 2e-19
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +3
Query: 21 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 200
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 201 SMVXIRVTVKGGGHVAQV 254
+ +R+ V+GGG +Q+
Sbjct: 67 KDIDMRIRVRGGGKTSQI 84
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 31.1 bits (67), Expect = 0.58
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +2
Query: 215 QSDSQGWWSC-STSYAIRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 379
QS + WW SY+ R +I+ L AFY+KY E+ K+ K+ L Q + + +
Sbjct: 24 QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83
Query: 380 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 469
R P+ G++A R++ R K+ +
Sbjct: 84 LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 171 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 61
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 429 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 277
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 13 RQDVSPSRPSKYSDVRKPPPQLRIAS 90
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 114 NGRPLDLVEPRLLQYKLQEPILLL 185
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 203
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 204 MVXIRVTVKGGG 239
+ V V GGG
Sbjct: 153 SYDVFVKVHGGG 164
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 125 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 39
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,936,293
Number of Sequences: 37544
Number of extensions: 359278
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -