Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30756.Seq
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   5e-29
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.11 
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           29   1.8  
SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   3.2  
SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_48227| Best HMM Match : DEAD (HMM E-Value=1.6)                      27   7.3  
SB_12490| Best HMM Match : DEAD (HMM E-Value=1.6)                      27   7.3  
SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            27   9.7  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     27   9.7  
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)                     27   9.7  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  124 bits (299), Expect = 5e-29
 Identities = 59/74 (79%), Positives = 65/74 (87%)
 Frame = +2

Query: 227 QGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 406
           +G    S  YAIRQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKF
Sbjct: 34  KGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKF 93

Query: 407 GGPGARARYQKSYR 448
           GGPGAR+RYQKSYR
Sbjct: 94  GGPGARSRYQKSYR 107



 Score = 49.2 bits (112), Expect(2) = 1e-06
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +3

Query: 159 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQV 254
           K++EPILLLGKE+F  V IRV VKGGGH +++
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRI 42



 Score = 20.6 bits (41), Expect(2) = 1e-06
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 33 QAVQVFGRK 59
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 236 WSCSTSYAIRQAIS-KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
           W  +   A++       ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 36  WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +2

Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
           Q+     W CST+  IR  + + L+  ++K              +++D    +A   R +
Sbjct: 282 QAHPSDLWVCSTN-KIRALVQQRLVEHHRKNYPRLPAT------IRFDPDPSIAHHYRKQ 334

Query: 395 PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
            +    PG R     +Y+       +G    G+ L  +Y GW T+  ++
Sbjct: 335 GRPVPVPGKRGEKVDAYKGTVVDVPLGVVLNGLTLEWKYAGWGTVHRVQ 383


>SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1009

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 215  QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
            Q+     W CST+  +   + + L+  ++K              +++D    VA   R +
Sbjct: 843  QAQPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLPAT------IRFDPDPSVAHRYRKQ 895

Query: 395  PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
             +    PG R     SY+    +  +G +  G+ L  +Y GW T+  ++
Sbjct: 896  GRPVPVPGKRGEKVDSYKGTVVEVPLGVFLNGLPLEWKYAGWGTVHRVQ 944


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +3

Query: 87  KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVTLSD 266
           ++G+G++RV GR    +    + Y+L+ PI+L  K   + + I    +  GH+ Q ++  
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQESVLS 141

Query: 267 KL 272
            L
Sbjct: 142 SL 143


>SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = +2

Query: 206  G*XQSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 385
            G  Q+ S   W CST+  +   + + L+  ++K              +++D    +A   
Sbjct: 743  GIEQAHSSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLPAT------IRFDPDPSIAHRY 795

Query: 386  RCEPKKFGGPGARARYQKSYR*AFKK-TIGWYRRGVVLSLRYIGWCTIKNIK 538
            R + +    PG R     +Y+    + ++G    G+ L  +Y GW T+  ++
Sbjct: 796  RKQGRPVPVPGKRGEKVDAYKGTVVEVSLGVVLNGLPLEWKYAGWGTVHRVQ 847


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 203 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 117
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1030

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +2

Query: 215  QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
            Q+     W CST+  +R  + + L+  ++K              +++D    VA   R +
Sbjct: 864  QAHPSDMWVCSTN-KMRALVQQRLVEHHRKNYPRLPAT------IRFDPDPSVAHRYRKQ 916

Query: 395  PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
                  PG R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 917  GWPVPAPGKRGEKVDAYKGTVVEVPLGVVLNGLPLERKYAGWGTVHRVQ 965


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 95  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 208
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_48227| Best HMM Match : DEAD (HMM E-Value=1.6)
          Length = 362

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = +2

Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIK-DILVQYDRSLLVADPRRC 391
           Q+     W CST+        K    F Q+ V+   K   +    +++D    VA   R 
Sbjct: 216 QAHPSDMWVCSTN--------KIGALFQQRLVEHHRKNYPRLPATIRFDPDPSVAHRYRK 267

Query: 392 EPKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
           + +    PG R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 268 QGRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 317


>SB_12490| Best HMM Match : DEAD (HMM E-Value=1.6)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = +2

Query: 215 QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIK-DILVQYDRSLLVADPRRC 391
           Q+     W CST+        K    F Q+ V+   K   +    +++D    VA   R 
Sbjct: 216 QAHPSDMWVCSTN--------KIGALFQQRLVEHHRKNYPRLPATIRFDPDPSVAHRYRK 267

Query: 392 EPKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
           + +    PG R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 268 QGRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 317


>SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +2

Query: 236  WSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGP 415
            W CST+  +   + + L+ +++K              +++D    VA   R + +    P
Sbjct: 963  WVCSTN-KMGALVQQRLVEYHRKNYPRLPAT------IRFDPDPSVAHRYRKQGRPVPVP 1015

Query: 416  GARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
            G R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 1016 GKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 1057


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +3

Query: 150 LQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVTLSDKLFQRL*SPSTRNM*TKPQRR 329
           +Q  +QE  LL  +E+   + + +  + GG  A   +SD   Q L +P+ R M  K +  
Sbjct: 197 IQCVVQERRLLDKQERIDSMIVNLKAEHGGEAAADAISD--LQELVTPAEREMLMKLKIT 254

Query: 330 KSKTS*YNTIGV 365
           +++ S  N   +
Sbjct: 255 QARQSGANNTNI 266


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 215  QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
            Q+     W CST+  +   + + L+  ++K     +        +++D    VA   R +
Sbjct: 856  QAHPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLTAT------IRFDPDPSVAHRYRKQ 908

Query: 395  PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
             +    PG R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 909  GRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 957


>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1115

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 215  QSDSQGWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 394
            Q+     W CST+  +   + + L+  ++K     +        +++D    VA   R +
Sbjct: 919  QAHPSDMWVCSTN-KMGALVQQRLVEHHRKNYPRLTAT------IRFDPDPSVAHRYRKQ 971

Query: 395  PKKFGGPGARARYQKSYR*AFKKT-IGWYRRGVVLSLRYIGWCTIKNIK 538
             +    PG R     +Y+    +  +G    G+ L  +Y GW T+  ++
Sbjct: 972  GRPVPVPGKRGEKVDAYKGTVVEVPLGVVLNGLPLEWKYAGWGTVHRVQ 1020


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,648
Number of Sequences: 59808
Number of extensions: 382879
Number of successful extensions: 1122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)