Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30756.Seq
(538 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 130 3e-30
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 130 3e-30
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 130 3e-30
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 130 3e-30
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 130 3e-30
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 75 2e-13
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.0
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.0
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.0
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 130 bits (314), Expect = 3e-30
Identities = 57/76 (75%), Positives = 71/76 (93%)
Frame = +3
Query: 27 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 206
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 207 VXIRVTVKGGGHVAQV 254
V IRV VKGGGHVAQ+
Sbjct: 66 VDIRVRVKGGGHVAQI 81
Score = 130 bits (313), Expect = 4e-30
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 254 YAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 433
YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARY
Sbjct: 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARY 141
Query: 434 QKSYR 448
QKSYR
Sbjct: 142 QKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 130 bits (314), Expect = 3e-30
Identities = 57/76 (75%), Positives = 71/76 (93%)
Frame = +3
Query: 27 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 206
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 207 VXIRVTVKGGGHVAQV 254
V IRV VKGGGHVAQ+
Sbjct: 66 VDIRVRVKGGGHVAQI 81
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (314), Expect = 3e-30
Identities = 57/76 (75%), Positives = 71/76 (93%)
Frame = +3
Query: 27 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 206
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 207 VXIRVTVKGGGHVAQV 254
V IRV VKGGGHVAQ+
Sbjct: 66 VDIRVRVKGGGHVAQI 81
Score = 130 bits (313), Expect = 4e-30
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 254 YAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 433
YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARY
Sbjct: 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARY 141
Query: 434 QKSYR 448
QKSYR
Sbjct: 142 QKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (314), Expect = 3e-30
Identities = 57/76 (75%), Positives = 71/76 (93%)
Frame = +3
Query: 27 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 206
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 207 VXIRVTVKGGGHVAQV 254
V IRV VKGGGHVAQ+
Sbjct: 66 VDIRVRVKGGGHVAQI 81
Score = 130 bits (313), Expect = 4e-30
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 254 YAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 433
YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARY
Sbjct: 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARY 141
Query: 434 QKSYR 448
QKSYR
Sbjct: 142 QKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 130 bits (314), Expect = 3e-30
Identities = 57/76 (75%), Positives = 71/76 (93%)
Frame = +3
Query: 27 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 206
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 207 VXIRVTVKGGGHVAQV 254
V IRV VKGGGHVAQ+
Sbjct: 66 VDIRVRVKGGGHVAQI 81
Score = 130 bits (313), Expect = 4e-30
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = +2
Query: 254 YAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 433
YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARY
Sbjct: 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARY 141
Query: 434 QKSYR 448
QKSYR
Sbjct: 142 QKSYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 74.5 bits (175), Expect = 2e-13
Identities = 47/145 (32%), Positives = 66/145 (45%)
Frame = +3
Query: 30 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 209
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 210 XIRVTVKGGGHVAQVTLSDKLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTXXX 389
I V VKG GHV Q+ + + P + T CWW T
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 390 XXXXXXXXXXXXXDTRNLTVKPSRK 464
TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +2
Query: 254 YAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 352
YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 93 YAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 400
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 400
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 317 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 400
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,601,013
Number of Sequences: 237096
Number of extensions: 1949856
Number of successful extensions: 4317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4317
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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