Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30756.Seq
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 124 4e-29
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 124 4e-29
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 124 5e-29
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 33 0.091
At1g43570.1 68414.m05001 hypothetical protein 31 0.37
At3g24255.1 68416.m03045 expressed protein 27 6.0
At3g62010.1 68416.m06964 expressed protein 27 7.9
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 124 bits (299), Expect = 4e-29
Identities = 57/68 (83%), Positives = 64/68 (94%)
Frame = +2
Query: 245 STSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 424
S YAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR
Sbjct: 79 SQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 138
Query: 425 ARYQKSYR 448
+RYQKSYR
Sbjct: 139 SRYQKSYR 146
Score = 99.1 bits (236), Expect = 2e-21
Identities = 41/80 (51%), Positives = 62/80 (77%)
Frame = +3
Query: 15 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 195 KFSMVXIRVTVKGGGHVAQV 254
+F+ V +R+ V GGGH +QV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQV 81
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 124 bits (299), Expect = 4e-29
Identities = 57/68 (83%), Positives = 64/68 (94%)
Frame = +2
Query: 245 STSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 424
S YAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR
Sbjct: 79 SQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 138
Query: 425 ARYQKSYR 448
+RYQKSYR
Sbjct: 139 SRYQKSYR 146
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/80 (52%), Positives = 62/80 (77%)
Frame = +3
Query: 15 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 194
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 195 KFSMVXIRVTVKGGGHVAQV 254
+F+ V +R+ V GGGH +QV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQV 81
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 124 bits (298), Expect = 5e-29
Identities = 57/73 (78%), Positives = 66/73 (90%)
Frame = +2
Query: 230 GWWSCSTSYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 409
G + S YAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74 GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133
Query: 410 GPGARARYQKSYR 448
GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146
Score = 98.3 bits (234), Expect = 3e-21
Identities = 40/74 (54%), Positives = 60/74 (81%)
Frame = +3
Query: 33 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 212
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 213 IRVTVKGGGHVAQV 254
+R+ GGG+ ++V
Sbjct: 68 MRIRATGGGNTSRV 81
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 33.5 bits (73), Expect = 0.091
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 51 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 230
GR+K + A + + G G +VN + D+ P +L ++ L + I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 231 GGGHVAQV 254
GGG QV
Sbjct: 369 GGGTTGQV 376
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 390 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 283
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 387 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACL 262
R G T++ LS+ R+ LIS S T FW A R AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182
>At3g62010.1 68416.m06964 expressed protein
Length = 1254
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +3
Query: 87 KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVTLSD 266
+R L++NG P R Y + P + K+ + + ++ +GGG ++ ++D
Sbjct: 891 QRTSSRLQINGAPHVYKVDRYPVYSMATPTISGAKKMLAYLGTKLKEEGGGSTERIVVTD 950
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,646
Number of Sequences: 28952
Number of extensions: 261175
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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