Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30755.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08) 38 0.009
SB_18907| Best HMM Match : RCC1 (HMM E-Value=0) 37 0.020
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 33 0.19
SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 31 0.75
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14) 31 0.99
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 30 2.3
SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 28 7.0
SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086) 28 7.0
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 28 9.2
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) 28 9.2
>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
Length = 970
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ VAAGRAH+ LT VYT G+N YGQ
Sbjct: 231 VSQVAAGRAHSAFLTKDGCVYTCGSNQYGQ 260
>SB_18907| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 444
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 395 NIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTRAWE 574
++ CG T KT V+ G+N Q+G ++ W+F + + L ++ +
Sbjct: 259 DVFCGSFATFVVAKTGSD--VYAWGLNNYGQLG---TGDVQTWHFPVKVKSLSQLNKSEK 313
Query: 575 CEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ +A G+ HTI+ VY LG YG+
Sbjct: 314 DKHITIANGQHHTIVCDPNGKVYALGRADYGR 345
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
I VA G AHT++LT V+ G+N +GQ
Sbjct: 38 ISKVALGTAHTVLLTFNHEVFAFGDNNFGQ 67
>SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 569 WECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
W+ ++ + G HT ++TD +YT G N GQ
Sbjct: 84 WKDDVLCITGGGGHTAMITDSRELYTCGWNNRGQ 117
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 587 AVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+VA G +HT++L +Y+ G+N++GQ
Sbjct: 587 SVAMGTSHTLVLLQNGKLYSFGSNSFGQ 614
>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
Length = 350
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
I + GR HT+ILTD V+ G+N GQ
Sbjct: 30 IVQASCGRGHTLILTDAGLVFGFGDNKLGQ 59
>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
Length = 447
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
E +I VA G H+ L +K ++ G+N YGQ
Sbjct: 274 EHKISRVACGSFHSAALAEKGRMFCCGDNTYGQ 306
>SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 590 VAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ G AH++ L+D +Y+ G N+YGQ
Sbjct: 167 ILCGYAHSLALSDAGCIYSWGANSYGQ 193
>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 407 GYGFTVASIKTSEQHKVFGT-GINTDSQIGYHSPREIILWNFCLAMHLFI 553
GYG + + V G G+N + + H E++L + CLA +F+
Sbjct: 548 GYGLGIVQSARQFANLVAGLQGVNLEGMLLNHCKEELLLGDNCLARSIFV 597
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
++ V+ G++H ++T + YT G+N+ GQ
Sbjct: 85 QLGEVSVGQSHVAVVTLERAAYTWGDNSRGQ 115
>SB_6743| Best HMM Match : Mab-21 (HMM E-Value=0.086)
Length = 412
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 377 ERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLF-I 553
+ ++ + GY S ++K I D+ Y SP ++ W F L
Sbjct: 133 DELEVEQVTPGYAGLKLRDTPSNRNKYNDLTI-ADNYGRYLSPEKVSRWFFSLVQKAVNT 191
Query: 554 YLTRAWECEIKAVAAGRAHTIILTDKEG 637
Y + E+K G A T+++T +EG
Sbjct: 192 YKDEIPQTEVKLTDNGPATTLVITYREG 219
>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 210 PIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKV 326
PI + P S+S++RRV +V W+S++ R+ ++V
Sbjct: 151 PILKSPRSQSSERRVHFSARSPKVFWISSTLNRRRQRRV 189
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
++ +A G H + TD VYT G+N GQ
Sbjct: 2678 KVITIATGSLHCVASTDTGEVYTWGDNDEGQ 2708
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ AV+AG H++ LT V+T G A+G+
Sbjct: 234 VVAVSAGSGHSLALTADGAVFTWGFGAHGR 263
>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 310 LATWEVDTQSTCLSKSPHMTRLS 242
+ TW VD S C S SPH L+
Sbjct: 88 IRTWNVDVNSLCCSWSPHAVWLA 110
>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
Length = 469
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 472 QYRFPNWIPFTTRNHPLELLLSYAPIYIP 558
+ +F NWIP+ PLELL Y P Y P
Sbjct: 407 EIQFENWIPYFCFVLPLELLQHY-PSYRP 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,738,305
Number of Sequences: 59808
Number of extensions: 479498
Number of successful extensions: 1082
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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