Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30755.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 36 0.022
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 36 0.022
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 36 0.022
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 36 0.029
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 33 0.20
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 33 0.27
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 32 0.35
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 31 0.81
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 31 0.81
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi... 31 1.1
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 31 1.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 31 1.1
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 30 1.4
At2g30590.1 68415.m03727 WRKY family transcription factor 30 1.4
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr... 30 1.4
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 30 1.9
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 30 1.9
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 30 1.9
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 30 1.9
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 29 2.5
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 29 3.3
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 29 3.3
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 29 3.3
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 4.3
At4g21700.1 68417.m03142 hypothetical protein 28 5.7
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 28 5.7
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 28 5.7
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 28 5.7
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 28 7.6
At3g58650.1 68416.m06537 expressed protein 27 10.0
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 27 10.0
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 27 10.0
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+KAVAA + HT+I T+ VYT G+N GQ
Sbjct: 247 VKAVAAAKHHTVIATEGGDVYTWGSNREGQ 276
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 572 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ +I AV+A HT +++D V+T G N GQ
Sbjct: 295 KAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQ 327
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+KAVAA + HT+I T+ VYT G+N GQ
Sbjct: 244 VKAVAAAKHHTVIATEGGDVYTWGSNREGQ 273
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 572 ECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ +I AV+A HT +++D V+T G N GQ
Sbjct: 292 KAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQ 324
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 36.3 bits (80), Expect = 0.022
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Frame = +2
Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIY--- 556
++TN+ACG FTV + ++E + G+ Q+G+ + E + + + +
Sbjct: 168 EVTNVACGADFTVW-LSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRP 226
Query: 557 ---LTRAWECEIKAVAAGRAHTIILTDKEG-VYTLGNNAYGQ 670
+ A E +K VA G HT+ + DK G VYT G YG+
Sbjct: 227 KAIASLAGETIVK-VACGTNHTVAV-DKNGYVYTWGFGGYGR 266
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+I AAGR HT++++D G N YGQ
Sbjct: 111 KIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQ 141
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 35.9 bits (79), Expect = 0.029
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Frame = +2
Query: 389 ITNIACGYGFTVASIKT----------SEQHKVFGTGINTDSQIGYHSPREIILWNFCLA 538
+T +ACG T A ++ S + +VF G Q+G H + L C+
Sbjct: 448 VTKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLG-HGDNDTKLLPECV- 505
Query: 539 MHLFIYLTRAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
I LT C+ VA G + T+ T + VYT+G+ AYGQ
Sbjct: 506 ----ISLTNENICQ---VACGHSLTVSRTSRGHVYTMGSTAYGQ 542
Score = 35.5 bits (78), Expect = 0.038
Identities = 28/95 (29%), Positives = 43/95 (45%)
Frame = +2
Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTR 565
+I +ACG+ TV+ +TS H V+ G Q+G + + NF + I
Sbjct: 512 NICQVACGHSLTVS--RTSRGH-VYTMGSTAYGQLGNPTAKG----NFPERVEGDIV--- 561
Query: 566 AWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
E ++ +A G H +LT K +YT G GQ
Sbjct: 562 --EASVEEIACGSYHVAVLTSKSEIYTWGKGLNGQ 594
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = +2
Query: 347 VWHPMRSSFAERFDITNIACGYGFTVASIKTSEQ-------HKVFGTGINTDSQIGYHSP 505
V +P +ACG TVA ++ Q K+F G +++G H
Sbjct: 1349 VSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLG-HGN 1407
Query: 506 REIILWNFCLAMHLFIYLTRAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+E L C++ + + +A G T+ LT V+T+G ++GQ
Sbjct: 1408 KETYLLPTCVSSLI--------DYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQ 1454
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 32.7 bits (71), Expect = 0.27
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNF 529
W P S IT +ACG T+ +E +VF TG+N Q+G +
Sbjct: 71 WTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLGVSDVKS------ 121
Query: 530 CLAMHLFIYL-TRAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
H L + +I ++AG H+ +T +Y G N+ GQ
Sbjct: 122 ----HAMDPLEVSGLDKDILHISAGYYHSAAITVDGELYMWGKNSSGQ 165
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+K ++ G HT ++TD+ V+ G N YGQ
Sbjct: 419 VKTISCGARHTAVITDEGRVFCWGWNKYGQ 448
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+K +A G H+ ++TD + T G YGQ
Sbjct: 313 VKKIACGGRHSAVITDTGALLTFGWGLYGQ 342
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
I+ VAAG HT + VY G N +GQ
Sbjct: 365 IEEVAAGLWHTTCASSDGDVYAFGGNQFGQ 394
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
IKA++ G H+ +TD G+ T G YGQ
Sbjct: 312 IKAISCGGRHSAAITDAGGLITFGWGLYGQ 341
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+++VAAG HTI ++ VY G N +GQ
Sbjct: 364 MESVAAGLWHTICISSDGKVYAFGGNQFGQ 393
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 31.1 bits (67), Expect = 0.81
Identities = 28/95 (29%), Positives = 42/95 (44%)
Frame = +2
Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTR 565
D ++CG+ TVA S V+ G + Q+G ++ + N L LTR
Sbjct: 512 DFIKVSCGWTLTVA---LSISGTVYTMGSSIHGQLGCPRAKDKSV-NVVLGN-----LTR 562
Query: 566 AWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ +K +A+G H +LT VYT G GQ
Sbjct: 563 QF---VKDIASGSHHVAVLTSFGNVYTWGKGMNGQ 594
>At5g28650.1 68418.m03508 WRKY family transcription factor
DNA-binding protein WRKY3, parsley, PIR:S72445
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 613 CVSTSRCHCFN---LTLPSSCKVYK*VHS*AEVPKDDFSW 503
C S S+CHC L + S KV + A++P D++SW
Sbjct: 228 CGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSW 267
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +2
Query: 452 KVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTRAWECEIKAVAAGRAHTIILTDK 631
K+F G S++G H +E L C+A L C+ VA G + T+ LT
Sbjct: 520 KLFTWGDGDKSRLG-HGDKEPKLVPTCVAA-----LVEPNFCQ---VACGHSLTVALTTS 570
Query: 632 EGVYTLGNNAYGQ 670
VYT+G+ YGQ
Sbjct: 571 GHVYTMGSPVYGQ 583
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 613 CVSTSRCHCFN---LTLPSSCKVYK*VHS*AEVPKDDFSW 503
C S S+CHC L + S KV + A++P D++SW
Sbjct: 228 CGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSW 267
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+I ++AAG AHTI LT VY+ G +G+
Sbjct: 17 KIISLAAGEAHTIALTGDGCVYSWGRGMFGR 47
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
I VAAG H++ ++D V+ G N YGQ
Sbjct: 75 IVGVAAGAYHSLAVSDDGSVWCWGYNIYGQ 104
>At2g30590.1 68415.m03727 WRKY family transcription factor
Length = 380
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 613 CVSTSRCHCFNL---TLPSSCKVYK*VHS*AEVPKDDFSW 503
C S+SRCHC + S +V + A++P DD+SW
Sbjct: 279 CGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSW 318
>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
protein kinase family protein contains similarity to
light repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
PF00069: Protein kinase domain and PF00560: Leucine Rich
Repeat
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 285 WVSTSHVARKGKKVTKTTSNWFGIQ 359
WVS S + ++GK VT +NW +Q
Sbjct: 46 WVSDSEIIKQGKPVTLANTNWNSMQ 70
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 566 AWECEIKAVAAGRAHTIILTDKEGVYTLG 652
+W+C+I A+A HT +T+ +Y G
Sbjct: 132 SWDCKISAIATSGTHTAAITESGELYMWG 160
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 283
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 566 AWECEIKAVAAGRAHTIILTDKEGVYTLG 652
+W+C+I A+A HT +T+ +Y G
Sbjct: 201 SWDCKISAIATSGTHTAAITESGELYMWG 229
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPR 508
W PM E IT IACG G+ S+ +E+ KV G Q+G S R
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLGSSSLR 352
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 590 VAAGRAHTIILTDKEGVYTLGNNAYGQ 670
VA G + T+ LT VYT+G+ YGQ
Sbjct: 521 VACGHSLTVALTTSGHVYTMGSPVYGQ 547
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/96 (30%), Positives = 44/96 (45%)
Frame = +2
Query: 383 FDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLT 562
++ IACG+ FTVA T+ H VF G Q+G +S + L CL +
Sbjct: 472 YNFHKIACGHTFTVAL--TTSGH-VFTMGGTAHGQLG-NSISDGKLP--CLVQDRLVGEF 525
Query: 563 RAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
++ +A G H +LT + V+T G A G+
Sbjct: 526 ------VEEIACGAHHVAVLTSRSEVFTWGKGANGR 555
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Frame = +2
Query: 398 IACGYGFTVASIKTSEQ-------HKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIY 556
+AC T A ++ Q K+F G +++G H +E L C++ +
Sbjct: 415 VACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLG-HGNKETYLLPTCVSSLI--- 470
Query: 557 LTRAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+ +A G T+ LT V+T+G A+GQ
Sbjct: 471 -----DYNFHKIACGHTFTVALTTSGHVFTMGGTAHGQ 503
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 590 VAAGRAHTIILTDKEGVYTLGNNAYGQ 670
VA G + T+ LT VYT+G+ YGQ
Sbjct: 499 VACGHSLTVGLTTSGKVYTMGSTVYGQ 525
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +2
Query: 398 IACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTRAWEC 577
+ACG+ TV + TS KV+ G Q+G + + CL LT+ +C
Sbjct: 499 VACGHSLTVG-LTTSG--KVYTMGSTVYGQLGNPNADGKLP---CLVEDK---LTK--DC 547
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
++ +A G H +LT + V+T G A G+
Sbjct: 548 -VEEIACGAYHVAVLTSRNEVFTWGKGANGR 577
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 584 KAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
K VAAG T+ L+ + YT G+N +GQ
Sbjct: 219 KQVAAGLHFTVFLSREGHAYTCGSNTHGQ 247
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 584 KAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
K VAAG T+ L+ + YT G+N +GQ
Sbjct: 219 KQVAAGLHFTVFLSREGHAYTCGSNTHGQ 247
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 440 SEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFI 553
SEQ + G ++D ++ +H + + W FC H F+
Sbjct: 950 SEQVSEYEDGYHSDRRLEFHEQKSLPGWGFCGIFHGFL 987
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/105 (25%), Positives = 44/105 (41%)
Frame = +2
Query: 356 PMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCL 535
P S I+ +ACG +A + KVF G + Q+G+ I L
Sbjct: 39 PQLLSLTSLPSISMLACGGAHVIA---LTSGGKVFTWGRGSSGQLGHGDILNITL----- 90
Query: 536 AMHLFIYLTRAWECEIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
L + + I AAG +H+ ++D ++T GN ++GQ
Sbjct: 91 -PKLVSFFD---DSVITQAAAGWSHSGFVSDSGCIFTCGNGSFGQ 131
>At4g21700.1 68417.m03142 hypothetical protein
Length = 962
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 497 HSPREIILWNFCLAMHLFIYLTRAWECEIKAVAAGRAHTIILTDKEG 637
HS +I+ W+F A H Y + AW+ I + A I L + G
Sbjct: 883 HSYGKILDWSFIYANHKMDYYSTAWDIIILCIGFLFAFLIFLQQRFG 929
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
E AG H++ +T K VYT G N GQ
Sbjct: 144 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQ 174
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
E AG H++ +T K VYT G N GQ
Sbjct: 44 EKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQ 74
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 174 KKVHDPSEEELLPIFQYPISKSTDRRVMCGDLLRQVLWVSTSHVARKGKKVTK 332
KK+ P++ +LP F T+ M L RQ L +++ G+ VTK
Sbjct: 512 KKIITPNKRHMLPYFVNSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTK 564
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 581 IKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
++ +A G H + L + ++ GNN YGQ
Sbjct: 198 VRLIAVGAFHNLALKEDGTLWAWGNNEYGQ 227
>At3g58650.1 68416.m06537 expressed protein
Length = 723
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -2
Query: 606 ARPAATALISHSQALVRYINRCIAKQKFQRMI 511
+R AAT++ + +AL +N+C+A KF+RM+
Sbjct: 597 SRGAATSMKTERKALFDCVNQCLA-VKFERML 627
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 27.5 bits (58), Expect = 10.0
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 389 ITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGYHSPREIILWNFCLAMHLFIYLTRA 568
I ++CG VA SE+ + G N Q+G E + + + +L A
Sbjct: 168 IRQVSCGTAHVVA---LSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAK-FLDEA 223
Query: 569 WEC-EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
E +I ++ G HT L+D VYT G + GQ
Sbjct: 224 PELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQ 258
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 578 EIKAVAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+++ VA G +HT++ + + G N+YGQ
Sbjct: 345 DVRLVACGHSHTLVYMREGRICGWGYNSYGQ 375
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 590 VAAGRAHTIILTDKEGVYTLGNNAYGQ 670
+A G + T+ LT V+T+G+ YGQ
Sbjct: 510 IACGHSLTVGLTTSGQVFTMGSTVYGQ 536
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,241
Number of Sequences: 28952
Number of extensions: 334264
Number of successful extensions: 850
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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