Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30753.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 408 NVPKSNNYVNEQIRGYI-RNSHE 473
           N+ KSN   NEQ+R Y+ +N  E
Sbjct: 319 NLEKSNLNHNEQLRKYLCKNEDE 341


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 408 NVPKSNNYVNEQIRGYI-RNSHE 473
           N+ KSN   NEQ+R Y+ +N  E
Sbjct: 211 NLEKSNLNHNEQLRKYLCKNEDE 233


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 252 FKCAVCGTKLTLK 290
           FKC +CG   T K
Sbjct: 163 FKCKICGRAFTTK 175


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 376 TTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSG 495
           T+P   S +    P   TTS N S   S T+ + +  ++G
Sbjct: 144 TSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAG 183


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 465 SHEPELSPIRATNGGASTRLQQGSYRVIPL 554
           SHEPE+   +  + G   R    S +++ L
Sbjct: 71  SHEPEMERPKGASNGKRARTAYTSSQLVEL 100


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 465 SHEPELSPIRATNGGASTRLQQGSYRVIPL 554
           SHEPE+   +  + G   R    S +++ L
Sbjct: 91  SHEPEMERPKGASNGKRARTAYTSSQLVEL 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,860
Number of Sequences: 336
Number of extensions: 4098
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)