Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30752.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    60   9e-11
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   3.3  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   4.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.7  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   5.7  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   10.0 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   10.0 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    24   10.0 

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 60.5 bits (140), Expect = 9e-11
 Identities = 24/30 (80%), Positives = 29/30 (96%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYD 30


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 VGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAK 210
           +G+Y     ++Y   NS+ W++ R+     KTAK
Sbjct: 249 IGLYMAGAAYMYNYTNSTVWKT-RVEGFANKTAK 281


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRK 242
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 196 TKTAKLTEMVSKSQGRPGTN 255
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 SKNHTNHNQNRK-AHRNGIKKPRKTRHEPP 260
           S N+ NHNQ++   +R+  +  ++ ++ PP
Sbjct: 182 SSNNKNHNQSKNPQNRSNSRSKQRNKNAPP 211


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 183 HTNHNQNRKAHRNGIKKPRKTRHE 254
           HTN  +NR+  + G  K R  R E
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTE 910


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 260 GWFVPGLPWLFDTI 219
           GW V GL W+F T+
Sbjct: 586 GWVVVGLIWIFFTV 599


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 115 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGT 252
           IYSND     R++ +S    QRI      T   TE V+ +   P +
Sbjct: 243 IYSNDSFQDPRVQANSPLTIQRISSAAPSTPTSTENVNYNMTTPSS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,702
Number of Sequences: 5004
Number of extensions: 18457
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)