Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30752.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 27 5.6
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 27 5.6
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 27 5.6
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 27 7.4
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08) 26 9.8
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11) 26 9.8
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 26 9.8
SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24) 26 9.8
SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_23864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 135 FPLQD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLA 266
+ L D K AKS+ T HN H + ++P + +PP A
Sbjct: 22 YRLMDVKKFTNAKSRIQTTHNPPHAFHTHPKRRPYSSILQPPFA 65
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 207 KAHRNGIKKPRKTRH 251
K HRNGIKKPR R+
Sbjct: 175 KWHRNGIKKPRTNRY 189
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 196 TKTAKLTEMVSKSQGRPGTNHPW 264
+KT+ M S S RPG N+PW
Sbjct: 931 SKTSPTLTMRSNSTTRPGKNNPW 953
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 103 RCVGIYSNDFIFLYRIENSSKWQSQRI-IQIITKT-AKLTEMVSKSQGRPGTNHPWHGSK 276
R G D I L R+ +K + ++++T+ + E S+ +GR PW SK
Sbjct: 1652 RMTGFAPEDAIKLRRVPLKAKKPPLEVPLEVVTEVYIAVNEEDSQDKGRRRATDPWWTSK 1711
Query: 277 IFKXSKXLQE-GXP 315
+ K + E G P
Sbjct: 1712 AYPILKRVMEPGQP 1725
>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
+ S +HN + R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 129 LYFPLQD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEP 257
L P++D K K K+H H ++KAH + P H P
Sbjct: 239 LVTPIKDKK--KPHHKKHHHKHRHHKKAHHSDPAVPPPIEHRP 279
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 156 LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHEPPLA 266
LI KSK+H NHN+ + H + I K H+ +A
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTIA 608
>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
Length = 294
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 207 CGFGYDLYDSLT 172
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
Length = 538
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 207 CGFGYDLYDSLT 172
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 260 GWFVPG-LPWLFDTISVSFAVLVMICMI 180
GWFV + W F + +SFA LV+ I
Sbjct: 24 GWFVLAWIAWAFGALHLSFAWLVLFLFI 51
>SB_51816| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-24)
Length = 384
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 323 LAXGXPSCKXXDXLKILDPCQGWFVPGLPWLFDTISVSFAVLVMICMI 180
L G P IL G+FV G +L+ T + V+++IC +
Sbjct: 146 LLPGLPLLALLSDKVILVYFPGFFVCGQEFLYPTGQIELGVIILICTL 193
>SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 156 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 251
+I + + H +HN +R + N IK + RH
Sbjct: 114 VIGVVRHVRHDDHNLSRSHNNNAIKSRNQNRH 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,782
Number of Sequences: 59808
Number of extensions: 134502
Number of successful extensions: 377
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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