Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30751.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.016
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.11
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.20
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.26
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.34
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.45
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 0.60
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 0.79
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 1.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.8
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 2.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 2.4
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.4
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 3.2
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 5.6
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 5.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 7.3
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 7.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 7.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.3
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 9.7
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 9.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.7
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 9.7
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.016
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 91 FHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.20
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTE--TNVLKQEY 106
FS DGKY + + D +K+W+ + +NV Y
Sbjct: 466 FSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMY 498
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 11 MFSEDGKYYSTITKDGRLKIWDTETNVLKQ 100
MFS DG++ + + D ++IW + +++Q
Sbjct: 424 MFSPDGQFIAAGSLDKVIRIWTSSGTLVEQ 453
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 0.26
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 112
+ DG+Y T D LK+WD T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.34
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETN 88
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.45
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTE 82
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPP 136
F E+GK + T + D ++ W+ T V ++ D+ + S P
Sbjct: 404 FLENGKRFVTTSDDSSMRFWEYGTPV-PIKFVADIAMHSMP 443
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 151
+E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 304 WVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEXXIEDGSVKQTY 438
W H V L +S + + SC D VY +DG VK++Y
Sbjct: 101 WTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGKVKRSY 144
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPDL--HLTSPPT 139
FS+ G++ T + DG ++ WD T +++ TP + LT PT
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT 624
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTET 85
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 163
+S DG + + +G ++IW+ +T + +Y H +C+ W+ ++
Sbjct: 209 YSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMAWSPIN 256
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
+S DG+ T DG++K+WD
Sbjct: 347 YSSDGQRIITGADDGKIKVWD 367
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
FS+D + T++KDG L +W
Sbjct: 198 FSKDQQTIYTVSKDGALFVW 217
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTET 85
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW--DTETNVLK 97
SEDG + +T KD +++W + E NV K
Sbjct: 373 SEDGVWLATGAKDNTVRLWNLNIEDNVYK 401
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETN--VLKQEYTPDLHLTSPP--TCLQWTT 157
+S +G Y + K G + IWDT+++ V++ Y+ + L P L +TT
Sbjct: 238 WSSNGMYIAASFKKGGILIWDTQSHEVVVELPYSTVVALAWQPFENVLSFTT 289
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
FS D KY + ++D ++W +T Y
Sbjct: 387 FSPDNKYLLSCSEDASARLWSVDTKTALVAY 417
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 88 VGLRIPYLKSAIFSNCRIVF 29
VGL IP +K + CR++F
Sbjct: 479 VGLIIPKMKQKVLKGCRLLF 498
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 229 PMHSIRHYNGKLLIYSISQAKIINVW 306
P+ I++ + L++S ++ K+INVW
Sbjct: 12 PLTQIKYNHDGDLLFSCAKDKVINVW 37
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 265 LIYSISQAKIINVWVPAKHFSAKVTALDWSRKYG 366
+IY ISQ+ +W +K ++W YG
Sbjct: 131 IIYEISQSGYYCIWSHSKKMLPYQALVNWQNAYG 164
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPD 115
FS +G+Y +T G + IW +T L +E D
Sbjct: 483 FSHNGRYLATGDTSGGVCIWSCKTAKLFKELGSD 516
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +2
Query: 35 YSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTT 157
+S+ + DG +IWD T + H L W T
Sbjct: 307 FSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNT 347
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
S+ GKY +T KD +++W
Sbjct: 195 SKSGKYLATAGKDAIIRVW 213
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 32 YYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPP 136
+ +T + D +++W+ + +VL ++ + L SPP
Sbjct: 386 FIATGSMDTTVRLWNLDNDVLHKDNPVEESLNSPP 420
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 116 LHLTSPPTCLQWTTVSQSVSNLKG 187
L + +PP+C ++ Q+++ LKG
Sbjct: 761 LKIETPPSCFEFYLTRQAMTRLKG 784
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIW 73
F GKY++T + D +K+W
Sbjct: 184 FDPAGKYFATESDDRTIKVW 203
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 32 YYSTITKDGRLKIWDTETNVLKQEYTPD 115
Y T + DG + IWD + N++ + P+
Sbjct: 251 YLITASSDGSVCIWDKDWNLVIEHNIPE 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,168
Number of Sequences: 5004
Number of extensions: 41877
Number of successful extensions: 177
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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