Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30751.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0724 - 27147479-27147706,27147830-27147920,27148002-271480... 33 0.15
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 33 0.15
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 31 0.46
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 30 1.1
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 30 1.4
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 29 1.8
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 29 2.4
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 29 3.2
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 3.2
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 29 3.2
01_06_0303 + 28324155-28325045,28326208-28326321 29 3.2
03_05_0525 + 25200207-25200580,25201061-25201751 28 4.3
03_05_0522 - 25161595-25162285,25162394-25163139 28 4.3
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 27 7.5
02_04_0149 + 20201674-20201891,20202009-20202111,20202658-202027... 27 9.9
>03_05_0724 -
27147479-27147706,27147830-27147920,27148002-27148060,
27148197-27148312,27148389-27148472,27148677-27148824,
27148958-27149103,27149610-27149729,27149900-27149998,
27150787-27150828,27150915-27151017
Length = 411
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
F+ DGK T + D L+IWD T + + T TCL T+ SQ++
Sbjct: 216 FTPDGKLICTGSDDASLRIWDPRTAQSRHVVRGHGYHTDGLTCLSVTSDSQTI 268
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLK 97
FS DG ++ + DGR+ +W+T T L+
Sbjct: 132 FSSDGNLLASGSFDGRINVWNTATRTLQ 159
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTP 112
A+FS DG T + D +K+WDT+T Q + P
Sbjct: 359 AIFSTDGSRVITASSDCTVKVWDTKTTDCLQTFKP 393
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A FS DG+Y + + DG +++WD + LK++
Sbjct: 224 ARFSPDGQYLVSCSVDGIIEVWDYISGKLKKD 255
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FSEDGK+ + + DG L+IWD
Sbjct: 495 FSEDGKWLISSSMDGTLRIWD 515
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWD 76
+ +S G Y T +KDG L+IWD
Sbjct: 303 QVRYSSTGSLYVTASKDGSLRIWD 326
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
+S D + + +KD LK+WD T+ LKQ+
Sbjct: 435 WSADSRLLLSGSKDSTLKVWDIRTHKLKQD 464
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
+S D + + +KD LK+WD T LKQ+
Sbjct: 384 WSADSRLLLSGSKDSTLKVWDIRTRKLKQD 413
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DG Y +TI +DG L+++D
Sbjct: 198 FSPDGTYLATIGRDGYLRVFD 218
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FS DG Y +T+ +DG L+++D
Sbjct: 347 FSPDGAYLATVGRDGYLRVFD 367
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 163
F+E Y + D +K+ + N L+++ L P+C+ W T S
Sbjct: 414 FNEGSSYIEILDSDEEVKVVNDTGNALRRKPLVPAKLPIVPSCVAWRTRS 463
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
F DG + + ++DG ++IWD T ++EY
Sbjct: 97 FHCDGNWMYSGSEDGTVRIWDLRTATCQREY 127
>01_06_0303 + 28324155-28325045,28326208-28326321
Length = 334
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
+ + S DG++ + + DG L++WD T V + +
Sbjct: 80 DVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRF 113
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 154 SEKGVYLASLTIDGRLSIW 172
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIW 73
SE G Y +++T DGRL IW
Sbjct: 278 SEKGVYLASLTIDGRLSIW 296
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT-SPPTCLQWTTVSQS 169
FS DG+Y +T +DG +++W V++ E +L P+C+ +T S
Sbjct: 279 FSSDGQYLATGGEDGVVRVW----RVVEGERPNELDFAEDDPSCVFFTVNENS 327
>02_04_0149 +
20201674-20201891,20202009-20202111,20202658-20202765,
20202882-20202991,20203170-20203277,20203667-20203733,
20204044-20204078,20204456-20204501,20204692-20204844
Length = 315
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
F+ DG Y + KD +++W+ T L + Y
Sbjct: 29 FNRDGNYCLSCGKDRIIRLWNPHTGALVKPY 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,565,492
Number of Sequences: 37544
Number of extensions: 245872
Number of successful extensions: 508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -