Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30751.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053) 58 4e-09
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 30 1.1
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 2.5
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 29 3.3
SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_21111| Best HMM Match : WD40 (HMM E-Value=0.0047) 28 5.8
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_3347| Best HMM Match : WD40 (HMM E-Value=0.053)
Length = 321
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
F +G++ + +T DGRLK+WD LK +YTP HL++ CL+W S++V
Sbjct: 10 FDNNGRFLALLTPDGRLKVWDCTNGSLKNQYTPSSHLSTTCACLKWCNSSRNV 62
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 325 SAKVTALDWSRKYGLYSCTKDSRVYEXXIEDGSVKQ 432
S+KV ++WSR LYSC+ D + E E K+
Sbjct: 67 SSKVNDVEWSRNGELYSCSSDKYIVEWCTEKAEHKR 102
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
FS++GK ++ D +LK+WD E+ L T P C W V ++
Sbjct: 1272 FSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGH---DGYPVCCAWNPVDNTM 1321
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
+ FSED +Y T + D ++W+ E + +EY+
Sbjct: 246 DCAFSEDSQYLVTASSDNLARLWNVEAGEVVREYS 280
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET 85
+S DG Y +T DG++K+W+T T
Sbjct: 1259 YSPDGNYIATGGDDGKVKLWNTMT 1282
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 304 WVPAK--HFSAKVTALDWS---RKYGLYSCTKDSRVYEXXIEDGSVKQTYNIS 447
W P++ +S+KV +L WS +Y L++C D I S QT++++
Sbjct: 301 WKPSEVQAYSSKVLSLLWSLGQHQYNLFTCGPDGNTMWWRIRPDSTDQTFHLA 353
>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
FS +GKY T D LK+WD + YT
Sbjct: 130 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 161
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A FS DG+Y T + DG +++W+ T ++++
Sbjct: 220 AAFSPDGQYLVTGSVDGFIEVWNFTTGKIRKD 251
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 106
FS DG+Y ++ + D R+ IW T+T L +
Sbjct: 341 FSPDGRYLASGSFDKRVHIWSTQTGNLVHSF 371
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
+ F+ DG + + D +K+WDTET YT
Sbjct: 138 DVSFNNDGTQFLSAGYDRYVKLWDTETGECLGRYT 172
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 35 YSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
+ + ++DG + +WDT + S P CL W+ + S+
Sbjct: 145 FLSASRDGSVVLWDTRKPRPAKRLADPTQYDSIPCCLDWSPLDSSI 190
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 23 DGKYYSTITKDGRLKIWDTE 82
D KY++T KDG L +W T+
Sbjct: 779 DDKYFATCAKDGVLHLWTTD 798
>SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVL 94
FS DG Y + DG+L IWD ++ L
Sbjct: 10 FSPDGSYVISGDADGKLNIWDWKSTKL 36
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 11 MFSEDGKYYSTITKDGRLKIWDTETNV 91
+F KY T +DG +K+WD NV
Sbjct: 191 LFFNPLKYLITAARDGSIKVWDDTGNV 217
>SB_21111| Best HMM Match : WD40 (HMM E-Value=0.0047)
Length = 96
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTE 82
S+D Y++T + DG +K+WD +
Sbjct: 56 SQDLMYFATASDDGTVKLWDLQ 77
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 23 DGKYYSTITKDGRLKIWDTETN 88
DGKY ++ KD ++IWD +T+
Sbjct: 125 DGKYLASGGKDKLIRIWDPDTS 146
>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 354 TPIQGGHFSAKMFGGHPNIYYFRLTY*VY*QFTIVVPNTMHWDSFSFVLAF 202
T IQ HFS + + F Y Q+ + +PN M W ++ F F
Sbjct: 706 TVIQVMHFSVMLMTAFMCLREFMQMYNNRLQYFLYMPNYMEWTAYIFTFLF 756
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,183
Number of Sequences: 59808
Number of extensions: 304392
Number of successful extensions: 744
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -