Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30751.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 34 0.059
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 34 0.059
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical pr... 33 0.18
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.9
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 28 3.9
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 28 3.9
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 28 3.9
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 28 3.9
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 28 5.1
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los... 27 6.7
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 27 8.9
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 27 8.9
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETN 88
+A+FS +G+Y T D ++KIWD E N
Sbjct: 330 DAIFSSEGRYIFTGGNDNQVKIWDVENN 357
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 34.3 bits (75), Expect = 0.059
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 5 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 151
E F+ +G + + + D +K+WDTET +KQ + H P CL++
Sbjct: 324 EVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRF----HTGHVPYCLKY 368
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 33.9 bits (74), Expect = 0.077
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 172
A +S DG +T +DG++KIW++ ++ T D H TS T ++WT +++
Sbjct: 366 AEYSPDGSLMATGAEDGKVKIWNSRSSFC--TVTFDEH-TSGVTAVKWTQSGRAI 417
>Z68315-3|CAA92670.1| 430|Caenorhabditis elegans Hypothetical
protein F28C6.3 protein.
Length = 430
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETN 88
+SE+ + Y T +KDG +KIWD +N
Sbjct: 267 YSENARLYVTASKDGHVKIWDGVSN 291
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
A F+++GKY T D +K+W+ TN YT
Sbjct: 309 AKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYT 342
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.55
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWD 76
FSE+G Y +T ++DG +K+WD
Sbjct: 388 FSENGYYLATGSEDGEVKLWD 408
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET-----NVLKQEYTPDLHLTSPP 136
F+ DG Y ++ + DG ++IWD+ T ++ +E+ P H+ P
Sbjct: 240 FNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP 285
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
FS +GKY + LK+WD + + +EYT
Sbjct: 283 FSPNGKYILASNLNNTLKLWDYQKLRVLKEYT 314
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
FS +GKY D LK+WD ++YT
Sbjct: 264 FSPNGKYILASNLDSTLKLWDFSKGKTLKQYT 295
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 2 AEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 109
+ A FS GKY T + D +KIW+ + + ++ T
Sbjct: 91 SSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLT 126
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 127
S DGK + +G + WD T + + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 AEAMFSEDGKYYSTI-TKDGRLKIWDTETNVL 94
A FSEDGKY +T +DG++ + T + L
Sbjct: 1249 AAVAFSEDGKYLATYGAEDGKINFFQTSQSFL 1280
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET 85
FS D + +T + DG++K+W ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A+FS D Y + +KDG +++W+ L+++
Sbjct: 220 AVFSPDANYLVSGSKDGFIEVWNYMNGKLRKD 251
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 14 FSEDGKYYSTITKDGRLKIWDTET 85
FS D + +T + DG++K+W ET
Sbjct: 272 FSRDSEMLATGSIDGKIKVWKVET 295
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 8 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 103
A+FS D Y + +KDG +++W+ L+++
Sbjct: 220 AVFSPDANYLVSGSKDGFIEVWNYMNGKLRKD 251
>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
protein 4 protein.
Length = 1392
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 38 STITKDGRLKIWDTETNVLKQEYTPDLHLTS 130
+TIT+D RL IW TN ++ P ++ S
Sbjct: 713 ATITEDDRLMIWGNFTNAQQRMEMPQMNAKS 743
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 274 SISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 402
S S+ + + PAKH A + W GL S + S + E
Sbjct: 212 SFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 254
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 274 SISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYE 402
S S+ + + PAKH A + W GL S + S + E
Sbjct: 393 SFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,020
Number of Sequences: 27780
Number of extensions: 231060
Number of successful extensions: 581
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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